RNA–Protein interactions for RNA: ENST00000262676.9

TTC39A-202, Transcript of tetratricopeptide repeat domain 39A, humanhuman

TSL 2 BASIC

Gene TTC39A, Length 6,287 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39A-202ENST00000262676 DCAF8L2P0C7V8 631 aa23.07■■□□□ 1.28
TTC39A-202ENST00000262676 SUPT5HO00267 1087 aaKnown RBP20.95■□□□□ 0.94
TTC39A-202ENST00000262676 PELP1Q8IZL8 1130 aaKnown RBP20.9■□□□□ 0.94
TTC39A-202ENST00000262676 SHROOM4Q9ULL8 1493 aa20.85■□□□□ 0.93
TTC39A-202ENST00000262676 EHMT2Q96KQ7 1210 aa20.82■□□□□ 0.92
TTC39A-202ENST00000262676 NISCHQ9Y2I1 1504 aa20.8■□□□□ 0.92
TTC39A-202ENST00000262676 ERICH6Q7L0X2 663 aa20.33■□□□□ 0.84
TTC39A-202ENST00000262676 RANGAP1P46060 587 aaPredicted RBP20.04■□□□□ 0.8
TTC39A-202ENST00000262676 FAM9AQ8IZU1 332 aaPredicted RBP19.98■□□□□ 0.79
TTC39A-202ENST00000262676 CCER1Q8TC90 406 aaPredicted RBP19.96■□□□□ 0.79
TTC39A-202ENST00000262676 TTBK1Q5TCY1 1321 aaPredicted RBP19.9■□□□□ 0.78
TTC39A-202ENST00000262676 ATP1B4Q9UN42 357 aaPredicted RBP19.84■□□□□ 0.77
TTC39A-202ENST00000262676 APLP2Q06481 763 aa19.83■□□□□ 0.77
TTC39A-202ENST00000262676 MYT1Q01538 1121 aa19.76■□□□□ 0.75
TTC39A-202ENST00000262676 CENPBP07199 599 aaPredicted RBP19.75■□□□□ 0.75
TTC39A-202ENST00000262676 PCGF6Q9BYE7 350 aa19.61■□□□□ 0.73
TTC39A-202ENST00000262676 YTHDC1Q96MU7 727 aaKnown RBP19.47■□□□□ 0.71
TTC39A-202ENST00000262676 NEFLP07196 543 aa19.45■□□□□ 0.7
TTC39A-202ENST00000262676 MYT1LQ9UL68 1186 aa19.4■□□□□ 0.7
TTC39A-202ENST00000262676 UBTFP17480 764 aaKnown RBP19.25■□□□□ 0.67
TTC39A-202ENST00000262676 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.24■□□□□ 0.67
TTC39A-202ENST00000262676 HNRNPUL2Q1KMD3 747 aaKnown RBP19.24■□□□□ 0.67
TTC39A-202ENST00000262676 TRIM41Q8WV44 630 aa19.23■□□□□ 0.67
TTC39A-202ENST00000262676 CHIC1Q5VXU3 224 aa19.22■□□□□ 0.67
TTC39A-202ENST00000262676 PABPN1Q86U42 306 aaKnown RBP eCLIP19.22■□□□□ 0.67
TTC39A-202ENST00000262676 ZEB1P37275 1124 aaPredicted RBP19.21■□□□□ 0.67
TTC39A-202ENST00000262676 DAXXQ9UER7 740 aaPredicted RBP19.19■□□□□ 0.66
TTC39A-202ENST00000262676 ABCC9O60706 1549 aa19.16■□□□□ 0.66
TTC39A-202ENST00000262676 PPARGC1BQ86YN6 1023 aaKnown RBP18.9■□□□□ 0.62
TTC39A-202ENST00000262676 FBLN2P98095 1184 aa18.85■□□□□ 0.61
TTC39A-202ENST00000262676 POLR3GLQ9BT43 218 aa18.8■□□□□ 0.6
TTC39A-202ENST00000262676 ITGAEP38570 1179 aa18.79■□□□□ 0.6
TTC39A-202ENST00000262676 RTL5Q5HYW3 569 aaPredicted RBP18.75■□□□□ 0.59
TTC39A-202ENST00000262676 ZNF316A6NFI3 1004 aaPredicted RBP18.73■□□□□ 0.59
TTC39A-202ENST00000262676 CNGB1Q14028 1251 aaPredicted RBP18.73■□□□□ 0.59
TTC39A-202ENST00000262676 CLSPNQ9HAW4 1339 aa18.58■□□□□ 0.56
TTC39A-202ENST00000262676 SLC4A1APQ9BWU0 796 aaKnown RBP18.57■□□□□ 0.56
TTC39A-202ENST00000262676 PLPPR3Q6T4P5 718 aa18.54■□□□□ 0.56
TTC39A-202ENST00000262676 HRCP23327 699 aa18.46■□□□□ 0.55
TTC39A-202ENST00000262676 ARID3CA6NKF2 412 aa18.43■□□□□ 0.54
TTC39A-202ENST00000262676 TRIM26Q12899 539 aaPredicted RBP18.34■□□□□ 0.53
TTC39A-202ENST00000262676 BCANQ96GW7 911 aa18.32■□□□□ 0.52
TTC39A-202ENST00000262676 FAM50AQ14320 339 aaKnown RBP18.21■□□□□ 0.51
TTC39A-202ENST00000262676 LOC105371045A0A1W2PR82 267 aa18.19■□□□□ 0.5
TTC39A-202ENST00000262676 P3H3Q8IVL6 736 aa18.18■□□□□ 0.5
TTC39A-202ENST00000262676 BCL11AQ9H165 835 aa18.15■□□□□ 0.5
TTC39A-202ENST00000262676 TRIM52Q96A61 297 aa18.14■□□□□ 0.49
TTC39A-202ENST00000262676 EIF5BO60841 1220 aaKnown RBP18.14■□□□□ 0.49
TTC39A-202ENST00000262676 DIEXFQ68CQ4 756 aaKnown RBP18.12■□□□□ 0.49
TTC39A-202ENST00000262676 CDK11AQ9UQ88 783 aaPredicted RBP18.09■□□□□ 0.49
TTC39A-202ENST00000262676 ESF1Q9H501 851 aaKnown RBP18.07■□□□□ 0.48
TTC39A-202ENST00000262676 ZBTB47Q9UFB7 747 aaPredicted RBP18.06■□□□□ 0.48
TTC39A-202ENST00000262676 GTF3C3Q9Y5Q9 886 aa18.05■□□□□ 0.48
TTC39A-202ENST00000262676 ZNF777Q9ULD5 760 aaPredicted RBP18.03■□□□□ 0.48
TTC39A-202ENST00000262676 SLC24A1O60721 1099 aa18.02■□□□□ 0.48
TTC39A-202ENST00000262676 ZNF326Q5BKZ1 582 aaKnown RBP18.02■□□□□ 0.48
TTC39A-202ENST00000262676 NPM1P06748 294 aaKnown RBP eCLIP18.02■□□□□ 0.48
TTC39A-202ENST00000262676 NPM2Q86SE8 214 aaKnown RBP17.9■□□□□ 0.46
TTC39A-202ENST00000262676 CANXP27824 592 aaKnown RBP17.89■□□□□ 0.45
TTC39A-202ENST00000262676 NEUROD1Q13562 356 aa17.87■□□□□ 0.45
TTC39A-202ENST00000262676 STAG3Q9UJ98 1225 aa17.87■□□□□ 0.45
TTC39A-202ENST00000262676 CHGAP10645 457 aaKnown RBP17.85■□□□□ 0.45
TTC39A-202ENST00000262676 SCRIBQ14160 1630 aa17.85■□□□□ 0.45
TTC39A-202ENST00000262676 ANP32AP39687 249 aaKnown RBP17.84■□□□□ 0.45
TTC39A-202ENST00000262676 GLIPR1L2Q4G1C9 344 aa17.83■□□□□ 0.44
TTC39A-202ENST00000262676 SENP3Q9H4L4 574 aaPredicted RBP17.83■□□□□ 0.44
TTC39A-202ENST00000262676 ANP32BQ92688 251 aaKnown RBP17.8■□□□□ 0.44
TTC39A-202ENST00000262676 ANP32CO43423 234 aa17.79■□□□□ 0.44
TTC39A-202ENST00000262676 PLEKHG5O94827 1062 aa17.76■□□□□ 0.43
TTC39A-202ENST00000262676 TRHP20396 242 aaPredicted RBP17.75■□□□□ 0.43
TTC39A-202ENST00000262676 SCAF1Q9H7N4 1312 aaKnown RBP17.74■□□□□ 0.43
TTC39A-202ENST00000262676 CHMP7Q8WUX9 453 aaPredicted RBP17.73■□□□□ 0.43
TTC39A-202ENST00000262676 A0A0G2JS52 829 aa17.67■□□□□ 0.42
TTC39A-202ENST00000262676 ARXQ96QS3 562 aa17.65■□□□□ 0.42
TTC39A-202ENST00000262676 HSP90AA1P07900 732 aaKnown RBP17.65■□□□□ 0.42
TTC39A-202ENST00000262676 KCNH8Q96L42 1107 aa17.62■□□□□ 0.41
TTC39A-202ENST00000262676 ARID4BQ4LE39 1312 aaPredicted RBP17.62■□□□□ 0.41
TTC39A-202ENST00000262676 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.62■□□□□ 0.41
TTC39A-202ENST00000262676 NEFMP07197 916 aa17.61■□□□□ 0.41
TTC39A-202ENST00000262676 NBR1Q14596 966 aa17.6■□□□□ 0.41
TTC39A-202ENST00000262676 ERCC6Q03468 1493 aa17.53■□□□□ 0.4
TTC39A-202ENST00000262676 ACIN1Q9UKV3 1341 aaKnown RBP17.52■□□□□ 0.4
TTC39A-202ENST00000262676 ZBTB7CA1YPR0 619 aa17.49■□□□□ 0.39
TTC39A-202ENST00000262676 FKBP8Q14318 412 aa17.48■□□□□ 0.39
TTC39A-202ENST00000262676 C14orf37Q86TY3 774 aa17.48■□□□□ 0.39
TTC39A-202ENST00000262676 UPF2Q9HAU5 1272 aaKnown RBP17.45■□□□□ 0.38
TTC39A-202ENST00000262676 CSRNP3Q8WYN3 585 aa17.44■□□□□ 0.38
TTC39A-202ENST00000262676 CHIC2Q9UKJ5 165 aa17.44■□□□□ 0.38
TTC39A-202ENST00000262676 CDK11BP21127 795 aaKnown RBP17.33■□□□□ 0.37
TTC39A-202ENST00000262676 PPP1R15AO75807 674 aaPredicted RBP17.33■□□□□ 0.36
TTC39A-202ENST00000262676 HAP1P54257 671 aaPredicted RBP17.32■□□□□ 0.36
TTC39A-202ENST00000262676 RB1CC1Q8TDY2 1594 aa17.31■□□□□ 0.36
TTC39A-202ENST00000262676 SALL2Q9Y467 1007 aaPredicted RBP17.3■□□□□ 0.36
TTC39A-202ENST00000262676 MLECQ14165 292 aa17.28■□□□□ 0.36
TTC39A-202ENST00000262676 TSPY4P0CV99 314 aa17.25■□□□□ 0.35
TTC39A-202ENST00000262676 TSPY10P0CW01 314 aa17.25■□□□□ 0.35
TTC39A-202ENST00000262676 KDM2AQ9Y2K7 1162 aa17.24■□□□□ 0.35
TTC39A-202ENST00000262676 FAM9BQ8IZU0 186 aa17.23■□□□□ 0.35
TTC39A-202ENST00000262676 HNRNPUQ00839 825 aaKnown RBP eCLIP17.23■□□□□ 0.35
TTC39A-202ENST00000262676 TNNT2P45379 298 aaPredicted RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms