Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 IQSEC3P1-201ENST00000538799 536 ntBASIC12.25□□□□□ -0.45
SUMO3P55854 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
SUMO3P55854 AC011247.3-201ENST00000603297 438 ntBASIC12.25□□□□□ -0.45
SUMO3P55854 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC12.25□□□□□ -0.45
SUMO3P55854 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC12.25□□□□□ -0.45
SUMO3P55854 AC138466.5-201ENST00000624002 808 ntBASIC12.25□□□□□ -0.45
SUMO3P55854 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC12.25□□□□□ -0.45
SUMO3P55854 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC12.25□□□□□ -0.45
SUMO3P55854 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SUMO3P55854 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC12.25□□□□□ -0.45
SUMO3P55854 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
SUMO3P55854 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC12.25□□□□□ -0.45
SUMO3P55854 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
SUMO3P55854 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SUMO3P55854 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SUMO3P55854 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
SUMO3P55854 AL355336.1-201ENST00000451355 1676 ntTSL 2 BASIC12.25□□□□□ -0.45
SUMO3P55854 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SUMO3P55854 DAO-201ENST00000228476 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SUMO3P55854 PPM1K-201ENST00000295908 1940 ntTSL 5 BASIC12.25□□□□□ -0.45
SUMO3P55854 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC12.25□□□□□ -0.45
SUMO3P55854 PTENP1-202ENST00000532280 3996 ntBASIC12.25□□□□□ -0.45
SUMO3P55854 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SUMO3P55854 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SUMO3P55854 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC12.25□□□□□ -0.45
SUMO3P55854 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SUMO3P55854 ALKBH1-201ENST00000216489 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SUMO3P55854 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC12.24□□□□□ -0.45
SUMO3P55854 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
SUMO3P55854 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC12.24□□□□□ -0.45
SUMO3P55854 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC12.24□□□□□ -0.45
SUMO3P55854 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC12.24□□□□□ -0.45
SUMO3P55854 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
SUMO3P55854 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
SUMO3P55854 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 MRFAP1L1-201ENST00000320848 1593 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
SUMO3P55854 EPS8L3-201ENST00000361852 2130 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC12.24□□□□□ -0.45
SUMO3P55854 PRR3-201ENST00000376557 1797 ntTSL 2 BASIC12.24□□□□□ -0.45
SUMO3P55854 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC12.24□□□□□ -0.45
SUMO3P55854 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC12.24□□□□□ -0.45
SUMO3P55854 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC12.24□□□□□ -0.45
SUMO3P55854 LINC01756-201ENST00000417651 2148 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC12.24□□□□□ -0.45
SUMO3P55854 AC012358.2-201ENST00000430010 1434 ntBASIC12.24□□□□□ -0.45
SUMO3P55854 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 GALP-202ENST00000440823 889 ntTSL 5 BASIC12.24□□□□□ -0.45
SUMO3P55854 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC12.24□□□□□ -0.45
SUMO3P55854 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC12.24□□□□□ -0.45
SUMO3P55854 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC12.24□□□□□ -0.45
SUMO3P55854 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
SUMO3P55854 KRT18P37-201ENST00000520711 1282 ntBASIC12.24□□□□□ -0.45
SUMO3P55854 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC12.24□□□□□ -0.45
SUMO3P55854 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
SUMO3P55854 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC12.24□□□□□ -0.45
SUMO3P55854 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 RN7SL162P-201ENST00000579233 292 ntBASIC12.24□□□□□ -0.45
SUMO3P55854 AC005562.1-201ENST00000583030 3219 ntBASIC12.24□□□□□ -0.45
SUMO3P55854 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
SUMO3P55854 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC12.24□□□□□ -0.45
SUMO3P55854 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 LINC00643-207ENST00000637212 734 ntBASIC12.24□□□□□ -0.45
SUMO3P55854 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
SUMO3P55854 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SUMO3P55854 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC12.23□□□□□ -0.45
SUMO3P55854 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
SUMO3P55854 BEST1-208ENST00000534553 1829 ntTSL 2 BASIC12.23□□□□□ -0.45
SUMO3P55854 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 AC135506.1-201ENST00000603877 1799 ntBASIC12.23□□□□□ -0.45
SUMO3P55854 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SUMO3P55854 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms