RNA–Protein interactions for RNA: ENST00000637212.1

LINC00643-207, long intergenic non-protein coding RNA 643, humanhuman

BASIC

Gene LINC00643, Length 734 nt, Biotype transcribed unitary pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-207ENST00000637212 NISCHQ9Y2I1 1504 aa31.08■■■□□ 2.57
LINC00643-207ENST00000637212 CCDC180Q9P1Z9 1646 aa27.21■■□□□ 1.95
LINC00643-207ENST00000637212 ABCC9O60706 1549 aa26.11■■□□□ 1.77
LINC00643-207ENST00000637212 ZCCHC6Q5VYS8 1495 aaKnown RBP25.99■■□□□ 1.75
LINC00643-207ENST00000637212 DCAF8L2P0C7V8 631 aa25.82■■□□□ 1.72
LINC00643-207ENST00000637212 DCAF1Q9Y4B6 1507 aa25.78■■□□□ 1.72
LINC00643-207ENST00000637212 MYO15BQ96JP2 1530 aa25.67■■□□□ 1.7
LINC00643-207ENST00000637212 NACADO15069 1562 aa25.56■■□□□ 1.68
LINC00643-207ENST00000637212 RB1CC1Q8TDY2 1594 aa25.39■■□□□ 1.65
LINC00643-207ENST00000637212 SHROOM4Q9ULL8 1493 aa24.94■■□□□ 1.58
LINC00643-207ENST00000637212 SCRIBQ14160 1630 aa24.89■■□□□ 1.57
LINC00643-207ENST00000637212 PABPN1Q86U42 306 aaKnown RBP eCLIP24.61■■□□□ 1.53
LINC00643-207ENST00000637212 UNC13AQ9UPW8 1703 aa24.59■■□□□ 1.53
LINC00643-207ENST00000637212 BICRAQ9NZM4 1560 aa24.56■■□□□ 1.52
LINC00643-207ENST00000637212 DNAJC5BQ9UF47 199 aa24.29■■□□□ 1.48
LINC00643-207ENST00000637212 CECR2Q9BXF3 1484 aa24.14■■□□□ 1.46
LINC00643-207ENST00000637212 BAZ1AQ9NRL2 1556 aaPredicted RBP24.03■■□□□ 1.44
LINC00643-207ENST00000637212 RSF1Q96T23 1441 aaPredicted RBP23.98■■□□□ 1.43
LINC00643-207ENST00000637212 MROH2BQ7Z745 1585 aa23.94■■□□□ 1.42
LINC00643-207ENST00000637212 SUPT5HO00267 1087 aaKnown RBP23.9■■□□□ 1.42
LINC00643-207ENST00000637212 SMARCA4P51532 1647 aa23.89■■□□□ 1.42
LINC00643-207ENST00000637212 EIF4G1Q04637 1599 aaKnown RBP23.87■■□□□ 1.41
LINC00643-207ENST00000637212 ATAD2BQ9ULI0 1458 aa23.71■■□□□ 1.39
LINC00643-207ENST00000637212 PEG3Q9GZU2 1588 aa23.7■■□□□ 1.38
LINC00643-207ENST00000637212 SMARCA2P51531 1590 aa23.68■■□□□ 1.38
LINC00643-207ENST00000637212 NCAPD3P42695 1498 aa23.65■■□□□ 1.38
LINC00643-207ENST00000637212 WIZO95785 1651 aa23.64■■□□□ 1.37
LINC00643-207ENST00000637212 CC2D2AQ9P2K1 1620 aa23.59■■□□□ 1.37
LINC00643-207ENST00000637212 BAZ1BQ9UIG0 1483 aaKnown RBP23.51■■□□□ 1.35
LINC00643-207ENST00000637212 TOP2AP11388 1531 aaKnown RBP23.49■■□□□ 1.35
LINC00643-207ENST00000637212 HMGXB3Q12766 1538 aa23.48■■□□□ 1.35
LINC00643-207ENST00000637212 CCDC88BA6NC98 1476 aa23.28■■□□□ 1.32
LINC00643-207ENST00000637212 CADPSQ9ULU8 1353 aa23.01■■□□□ 1.27
LINC00643-207ENST00000637212 CFTRP13569 1480 aa22.97■■□□□ 1.27
LINC00643-207ENST00000637212 LAMC3Q9Y6N6 1575 aa22.81■■□□□ 1.24
LINC00643-207ENST00000637212 NESP48681 1621 aa22.77■■□□□ 1.24
LINC00643-207ENST00000637212 PDS5BQ9NTI5 1447 aa22.75■■□□□ 1.23
LINC00643-207ENST00000637212 CHIC1Q5VXU3 224 aa22.72■■□□□ 1.23
LINC00643-207ENST00000637212 FANCD2Q9BXW9 1451 aa22.66■■□□□ 1.22
LINC00643-207ENST00000637212 AEBP2Q6ZN18 517 aaPredicted RBP22.65■■□□□ 1.22
LINC00643-207ENST00000637212 TRIM41Q8WV44 630 aa22.59■■□□□ 1.21
LINC00643-207ENST00000637212 WRNQ14191 1432 aaPredicted RBP eCLIP22.57■■□□□ 1.2
LINC00643-207ENST00000637212 PRDM2Q13029 1718 aa22.56■■□□□ 1.2
LINC00643-207ENST00000637212 CEP164Q9UPV0 1460 aa22.55■■□□□ 1.2
LINC00643-207ENST00000637212 ABCC8Q09428 1581 aa22.5■■□□□ 1.19
LINC00643-207ENST00000637212 ERCC6Q03468 1493 aa22.49■■□□□ 1.19
LINC00643-207ENST00000637212 CUX2O14529 1486 aa22.48■■□□□ 1.19
LINC00643-207ENST00000637212 CUX1P39880 1505 aa22.41■■□□□ 1.18
LINC00643-207ENST00000637212 MRC2Q9UBG0 1479 aa22.4■■□□□ 1.18
LINC00643-207ENST00000637212 TOP2BQ02880 1626 aa22.38■■□□□ 1.17
LINC00643-207ENST00000637212 URB2Q14146 1524 aaKnown RBP22.36■■□□□ 1.17
LINC00643-207ENST00000637212 KIF21AQ7Z4S6 1674 aa22.36■■□□□ 1.17
LINC00643-207ENST00000637212 SYNJ1O43426 1573 aa22.36■■□□□ 1.17
LINC00643-207ENST00000637212 TOPBP1Q92547 1522 aa22.36■■□□□ 1.17
LINC00643-207ENST00000637212 DNMBPQ6XZF7 1577 aa22.35■■□□□ 1.17
LINC00643-207ENST00000637212 DNAJC5Q9H3Z4 198 aa22.34■■□□□ 1.17
LINC00643-207ENST00000637212 BIVM-ERCC5R4GMW8 1640 aa22.31■■□□□ 1.16
LINC00643-207ENST00000637212 WDR62O43379 1518 aa22.26■■□□□ 1.15
LINC00643-207ENST00000637212 FGD5Q6ZNL6 1462 aa22.24■■□□□ 1.15
LINC00643-207ENST00000637212 THOC2Q8NI27 1593 aaKnown RBP22.24■■□□□ 1.15
LINC00643-207ENST00000637212 SOGA1O94964 1423 aa22.23■■□□□ 1.15
LINC00643-207ENST00000637212 POLA1P09884 1462 aaPredicted RBP22.21■■□□□ 1.15
LINC00643-207ENST00000637212 RAD54L2Q9Y4B4 1467 aa22.12■■□□□ 1.13
LINC00643-207ENST00000637212 EEA1Q15075 1411 aa22.12■■□□□ 1.13
LINC00643-207ENST00000637212 IFT140Q96RY7 1462 aa22.11■■□□□ 1.13
LINC00643-207ENST00000637212 ABCA10Q8WWZ4 1543 aa22.1■■□□□ 1.13
LINC00643-207ENST00000637212 KIF27Q86VH2 1401 aa22.08■■□□□ 1.13
LINC00643-207ENST00000637212 CSRNP3Q8WYN3 585 aa22.06■■□□□ 1.12
LINC00643-207ENST00000637212 FAM9AQ8IZU1 332 aaPredicted RBP22.04■■□□□ 1.12
LINC00643-207ENST00000637212 RUSC2Q8N2Y8 1516 aa22.01■■□□□ 1.11
LINC00643-207ENST00000637212 TARBP1Q13395 1621 aaKnown RBP22■■□□□ 1.11
LINC00643-207ENST00000637212 TDRD9Q8NDG6 1382 aaKnown RBP21.99■■□□□ 1.11
LINC00643-207ENST00000637212 IGF1RP08069 1367 aa21.97■■□□□ 1.11
LINC00643-207ENST00000637212 GAPVD1Q14C86 1478 aa21.92■■□□□ 1.1
LINC00643-207ENST00000637212 WDR97A6NE52 1622 aa21.91■■□□□ 1.1
LINC00643-207ENST00000637212 AQRO60306 1485 aaKnown RBP eCLIP21.9■■□□□ 1.1
LINC00643-207ENST00000637212 ZNF608Q9ULD9 1512 aaPredicted RBP21.9■■□□□ 1.1
LINC00643-207ENST00000637212 ABCA5Q8WWZ7 1642 aa21.84■■□□□ 1.09
LINC00643-207ENST00000637212 GRIN2BQ13224 1484 aa21.84■■□□□ 1.09
LINC00643-207ENST00000637212 ERICH3Q5RHP9 1530 aa21.83■■□□□ 1.09
LINC00643-207ENST00000637212 CARMIL1Q5VZK9 1371 aa21.82■■□□□ 1.08
LINC00643-207ENST00000637212 PRXQ9BXM0 1461 aa21.81■■□□□ 1.08
LINC00643-207ENST00000637212 LOC105371045A0A1W2PR82 267 aa21.79■■□□□ 1.08
LINC00643-207ENST00000637212 EIF4G3O43432 1585 aaKnown RBP21.74■■□□□ 1.07
LINC00643-207ENST00000637212 FHAD1B1AJZ9 1412 aa21.73■■□□□ 1.07
LINC00643-207ENST00000637212 RAPGEF2Q9Y4G8 1499 aa21.72■■□□□ 1.07
LINC00643-207ENST00000637212 GOLGA3Q08378 1498 aa21.7■■□□□ 1.06
LINC00643-207ENST00000637212 MAGI1Q96QZ7 1491 aaPredicted RBP21.7■■□□□ 1.06
LINC00643-207ENST00000637212 KIF21BO75037 1637 aa21.69■■□□□ 1.06
LINC00643-207ENST00000637212 UBTFP17480 764 aaKnown RBP21.68■■□□□ 1.06
LINC00643-207ENST00000637212 CUL7Q14999 1698 aa21.67■■□□□ 1.06
LINC00643-207ENST00000637212 SNAPC4Q5SXM2 1469 aa21.66■■□□□ 1.06
LINC00643-207ENST00000637212 CHMP7Q8WUX9 453 aaPredicted RBP21.65■■□□□ 1.06
LINC00643-207ENST00000637212 EHMT2Q96KQ7 1210 aa21.65■■□□□ 1.06
LINC00643-207ENST00000637212 PBRM1Q86U86 1689 aa21.63■■□□□ 1.05
LINC00643-207ENST00000637212 TNIKQ9UKE5 1360 aa21.62■■□□□ 1.05
LINC00643-207ENST00000637212 SYNJ2O15056 1496 aa21.61■■□□□ 1.05
LINC00643-207ENST00000637212 ADAMTS12P58397 1594 aa21.59■■□□□ 1.05
LINC00643-207ENST00000637212 FBLN2P98095 1184 aa21.57■■□□□ 1.04
LINC00643-207ENST00000637212 GRIN2AQ12879 1464 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms