Protein–RNA interactions for Protein: Q9NQV7

PRDM9, Histone-lysine N-methyltransferase PRDM9, humanhuman

Predictions only

Length 894 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9Q9NQV7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21■□□□□ 0.95
PRDM9Q9NQV7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PRDM9Q9NQV7 AC110285.6-201ENST00000617652 491 ntBASIC21■□□□□ 0.95
PRDM9Q9NQV7 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21■□□□□ 0.95
PRDM9Q9NQV7 RALB-208ENST00000631312 311 ntTSL 5 BASIC21■□□□□ 0.95
PRDM9Q9NQV7 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PRDM9Q9NQV7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRDM9Q9NQV7 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRDM9Q9NQV7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PRDM9Q9NQV7 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.99■□□□□ 0.95
PRDM9Q9NQV7 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PRDM9Q9NQV7 AL138724.1-201ENST00000606771 1088 ntBASIC20.99■□□□□ 0.95
PRDM9Q9NQV7 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
PRDM9Q9NQV7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRDM9Q9NQV7 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 SERBP1P1-201ENST00000396021 1160 ntBASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 AL136162.1-201ENST00000607711 1078 ntBASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRDM9Q9NQV7 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PRDM9Q9NQV7 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 PBX2P1-201ENST00000493219 1291 ntBASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 MIR3181-201ENST00000578512 73 ntBASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 AL499627.2-201ENST00000606283 725 ntBASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 AC135279.3-201ENST00000610945 1311 ntBASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 AC012676.1-201ENST00000574705 1949 ntBASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PRDM9Q9NQV7 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 pRNA.6-201ENST00000610482 90 ntBASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 pRNA.5-201ENST00000612139 90 ntBASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 AC011298.3-201ENST00000615796 283 ntBASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 AC106739.1-201ENST00000617035 715 ntBASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 pRNA.11-201ENST00000618423 90 ntBASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 pRNA.13-201ENST00000619112 90 ntBASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PRDM9Q9NQV7 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.94■□□□□ 0.94
PRDM9Q9NQV7 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PRDM9Q9NQV7 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.94■□□□□ 0.94
PRDM9Q9NQV7 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.94■□□□□ 0.94
PRDM9Q9NQV7 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.94■□□□□ 0.94
PRDM9Q9NQV7 AC024257.2-201ENST00000549699 147 ntBASIC20.94■□□□□ 0.94
PRDM9Q9NQV7 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PRDM9Q9NQV7 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.94■□□□□ 0.94
PRDM9Q9NQV7 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.94■□□□□ 0.94
PRDM9Q9NQV7 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PRDM9Q9NQV7 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.94■□□□□ 0.94
PRDM9Q9NQV7 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PRDM9Q9NQV7 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRDM9Q9NQV7 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
PRDM9Q9NQV7 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.93■□□□□ 0.94
PRDM9Q9NQV7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PRDM9Q9NQV7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms