Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 LAMTOR4-204ENST00000466498 371 ntTSL 216.09■□□□□ 0.171e-6■■■■■ 176.6
SF3B1O75533 DOCK8-209ENST00000469391 6386 ntTSL 1 (best) BASIC9.13□□□□□ -0.952e-6■■■■■ 176.4
SF3B1O75533 DOCK8-205ENST00000453981 7237 ntTSL 5 BASIC8.97□□□□□ -0.972e-6■■■■■ 176.4
SF3B1O75533 DOCK8-216ENST00000495184 9277 ntTSL 1 (best)8.18□□□□□ -1.12e-6■■■■■ 176.4
SF3B1O75533 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.282e-6■■■■■ 175.9
SF3B1O75533 JAZF1-207ENST00000454041 503 ntTSL 59.24□□□□□ -0.932e-7■■■■■ 175.6
SF3B1O75533 JAZF1-206ENST00000452993 564 ntTSL 48.77□□□□□ -1.012e-7■■■■■ 175.6
SF3B1O75533 JAZF1-201ENST00000283928 3125 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.072e-7■■■■■ 175.6
SF3B1O75533 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.66■□□□□ 0.93e-7■■■■■ 175.4
SF3B1O75533 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.89■□□□□ 0.613e-7■■■■■ 175.4
SF3B1O75533 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.86■□□□□ 0.293e-7■■■■■ 175.4
SF3B1O75533 CHD1L-205ENST00000467213 2782 ntTSL 1 (best)16.14■□□□□ 0.173e-7■■■■■ 175.4
SF3B1O75533 USP3-205ENST00000557884 958 ntTSL 315.53■□□□□ 0.081e-6■■■■■ 175.4
SF3B1O75533 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.57□□□□□ -0.081e-6■■■■■ 175.4
SF3B1O75533 CHD1L-208ENST00000488864 2415 ntTSL 213.82□□□□□ -0.23e-7■■■■■ 175.4
SF3B1O75533 CHD1L-210ENST00000622533 2937 ntTSL 513.44□□□□□ -0.263e-7■■■■■ 175.4
SF3B1O75533 CHD1L-202ENST00000369258 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.33e-7■■■■■ 175.4
SF3B1O75533 USP3-202ENST00000380324 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.431e-6■■■■■ 175.4
SF3B1O75533 USP3-206ENST00000558157 2439 ntTSL 1 (best)11.25□□□□□ -0.611e-6■■■■■ 175.4
SF3B1O75533 USP3-219ENST00000561326 543 ntTSL 410.9□□□□□ -0.661e-6■■■■■ 175.4
SF3B1O75533 USP3-216ENST00000559873 584 ntTSL 510.89□□□□□ -0.671e-6■■■■■ 175.4
SF3B1O75533 USP3-217ENST00000560070 545 ntTSL 49.27□□□□□ -0.931e-6■■■■■ 175.4
SF3B1O75533 USP3-210ENST00000559192 5499 ntTSL 1 (best)7.21□□□□□ -1.261e-6■■■■■ 175.4
SF3B1O75533 KCNAB2-211ENST00000445501 486 ntTSL 417.18■□□□□ 0.344e-6■■■■■ 175.2
SF3B1O75533 KCNAB2-216ENST00000478098 413 ntTSL 216.22■□□□□ 0.194e-6■■■■■ 175.2
SF3B1O75533 FNBP4-201ENST00000263773 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.482e-6■■■■■ 175.2
SF3B1O75533 MTMR14-213ENST00000606184 2966 nt10.92□□□□□ -0.667e-7■■■■■ 175.2
SF3B1O75533 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.365e-6■■■■■ 174.7
SF3B1O75533 SAMM50-203ENST00000474323 2368 ntTSL 215.06■□□□□ 05e-6■■■■■ 174.7
SF3B1O75533 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.713e-6■■■■■ 174.5
SF3B1O75533 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC15.88■□□□□ 0.133e-6■■■■■ 174.5
SF3B1O75533 KCNAB2-206ENST00000378097 4201 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.333e-6■■■■■ 174.5
SF3B1O75533 ZNF675-209ENST00000601935 1444 ntTSL 1 (best) BASIC10.55□□□□□ -0.722e-6■■■■■ 174.2
SF3B1O75533 ZNF675-207ENST00000600313 543 ntTSL 4 BASIC10.16□□□□□ -0.782e-6■■■■■ 174.2
SF3B1O75533 ZNF675-202ENST00000596211 581 ntTSL 4 BASIC8.51□□□□□ -1.052e-6■■■■■ 174.2
SF3B1O75533 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.282e-6■■■■■ 174.2
SF3B1O75533 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.88□□□□□ -1.312e-6■■■■■ 174.2
SF3B1O75533 ZNF675-203ENST00000597074 595 ntTSL 33.67□□□□□ -1.822e-6■■■■■ 174.2
SF3B1O75533 ZNF675-205ENST00000599535 721 ntTSL 31.98□□□□□ -2.092e-6■■■■■ 174.2
SF3B1O75533 PDXK-215ENST00000476313 1704 ntTSL 321.64■■□□□ 1.054e-6■■■■■ 174.1
SF3B1O75533 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.29■□□□□ 0.364e-6■■■■■ 174.1
SF3B1O75533 CYP20A1-208ENST00000463131 674 ntTSL 517.16■□□□□ 0.344e-6■■■■■ 174.1
SF3B1O75533 CLTCL1-207ENST00000611723 838 ntTSL 217.04■□□□□ 0.324e-6■■■■■ 174.1
SF3B1O75533 BAIAP2-206ENST00000570913 559 ntTSL 416.65■□□□□ 0.264e-6■■■■■ 174.1
SF3B1O75533 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.4■□□□□ 0.224e-6■■■■■ 174.1
SF3B1O75533 CYP20A1-207ENST00000461371 1359 ntTSL 216.33■□□□□ 0.24e-6■■■■■ 174.1
SF3B1O75533 WDR7-208ENST00000589935 544 ntTSL 4 BASIC15.45■□□□□ 0.064e-6■■■■■ 174.1
SF3B1O75533 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.37■□□□□ 0.054e-6■■■■■ 174.1
SF3B1O75533 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC15.06■□□□□ 04e-6■■■■■ 174.1
SF3B1O75533 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.084e-6■■■■■ 174.1
SF3B1O75533 MAD1L1-222ENST00000491858 494 ntTSL 414.3□□□□□ -0.121e-7■■■■■ 174.1
SF3B1O75533 BRD4-211ENST00000602230 751 ntTSL 314.24□□□□□ -0.135e-9■■■■■ 174.1
SF3B1O75533 CYP20A1-210ENST00000613925 1986 ntTSL 2 BASIC13.72□□□□□ -0.214e-6■■■■■ 174.1
SF3B1O75533 CYP20A1-206ENST00000449301 1730 ntTSL 1 (best)13.66□□□□□ -0.224e-6■■■■■ 174.1
SF3B1O75533 CLTCL1-210ENST00000617926 1695 ntTSL 2 BASIC13.27□□□□□ -0.284e-6■■■■■ 174.1
SF3B1O75533 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.384e-6■■■■■ 174.1
SF3B1O75533 CYP20A1-205ENST00000443941 804 ntTSL 511.54□□□□□ -0.564e-6■■■■■ 174.1
SF3B1O75533 CYP20A1-204ENST00000431118 2636 ntTSL 211.31□□□□□ -0.64e-6■■■■■ 174.1
SF3B1O75533 CA5B-210ENST00000498004 488 ntTSL 311.17□□□□□ -0.624e-6■■■■■ 174.1
SF3B1O75533 CLTCL1-209ENST00000617103 4859 ntTSL 1 (best)10.81□□□□□ -0.684e-6■■■■■ 174.1
SF3B1O75533 CLTCL1-202ENST00000427926 5513 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.764e-6■■■■■ 174.1
SF3B1O75533 CYP20A1-209ENST00000489360 601 ntTSL 510.12□□□□□ -0.794e-6■■■■■ 174.1
SF3B1O75533 CLTCL1-211ENST00000621271 5313 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.794e-6■■■■■ 174.1
SF3B1O75533 CLTCL1-208ENST00000615606 4994 ntTSL 1 (best)9.84□□□□□ -0.834e-6■■■■■ 174.1
SF3B1O75533 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC9.53□□□□□ -0.884e-6■■■■■ 174.1
SF3B1O75533 WDR7-202ENST00000357574 7213 ntTSL 5 BASIC8.6□□□□□ -1.034e-6■■■■■ 174.1
SF3B1O75533 STX8-202ENST00000570583 367 ntTSL 55.02□□□□□ -1.614e-6■■■■■ 174.1
SF3B1O75533 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.614e-6■■■■■ 174.1
SF3B1O75533 TMEM9-211ENST00000497582 1075 ntTSL 324.8■■□□□ 1.563e-8■■■■■ 173.8
SF3B1O75533 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC22.21■■□□□ 1.153e-8■■■■■ 173.8
SF3B1O75533 TMEM9-206ENST00000435310 507 ntTSL 218.04■□□□□ 0.483e-8■■■■■ 173.8
SF3B1O75533 TMEM9-210ENST00000495205 971 ntTSL 513.94□□□□□ -0.183e-8■■■■■ 173.8
SF3B1O75533 TMEM9-207ENST00000455367 487 ntTSL 511.97□□□□□ -0.493e-8■■■■■ 173.8
SF3B1O75533 TMEM9-205ENST00000414605 545 ntTSL 211.96□□□□□ -0.493e-8■■■■■ 173.8
SF3B1O75533 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.198e-9■■■■■ 173.8
SF3B1O75533 SH2B3-203ENST00000550925 648 ntTSL 522.36■■□□□ 1.172e-6■■■■■ 173.6
SF3B1O75533 PEPD-212ENST00000593163 1045 ntTSL 220.17■□□□□ 0.823e-6■■■■■ 173.5
SF3B1O75533 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.51■□□□□ 0.713e-6■■■■■ 173.5
SF3B1O75533 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.17■□□□□ 0.343e-6■■■■■ 173.5
SF3B1O75533 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.213e-6■■■■■ 173.5
SF3B1O75533 PEPD-213ENST00000609145 570 ntTSL 211.55□□□□□ -0.563e-6■■■■■ 173.5
SF3B1O75533 VPS13D-212ENST00000543766 3838 ntTSL 2 BASIC8.53□□□□□ -1.043e-6■■■■■ 173.5
SF3B1O75533 RPAP1-201ENST00000304330 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.534e-8■■■■■ 173.3
SF3B1O75533 RPAP1-204ENST00000562303 5897 ntTSL 1 (best)11.43□□□□□ -0.584e-8■■■■■ 173.3
SF3B1O75533 RPAP1-202ENST00000561603 3906 ntTSL 5 BASIC9.29□□□□□ -0.924e-8■■■■■ 173.3
SF3B1O75533 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.99■■□□□ 1.432e-6■■■■■ 173.2
SF3B1O75533 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.062e-6■■■■■ 173.2
SF3B1O75533 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.523e-6■■■■■ 173.2
SF3B1O75533 BCL9L-205ENST00000532899 611 ntTSL 517.73■□□□□ 0.434e-6■■■■■ 173.2
SF3B1O75533 TMEM131-203ENST00000418629 1105 ntTSL 215.89■□□□□ 0.133e-6■■■■■ 173.2
SF3B1O75533 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.49■□□□□ 0.074e-6■■■■■ 173.2
SF3B1O75533 UXS1-202ENST00000409032 1935 ntTSL 1 (best) BASIC10.63□□□□□ -0.712e-6■■■■■ 173.2
SF3B1O75533 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.56■■□□□ 1.682e-7■■■■■ 172.9
SF3B1O75533 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.962e-7■■■■■ 172.9
SF3B1O75533 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.822e-7■■■■■ 172.9
SF3B1O75533 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.52e-7■■■■■ 172.9
SF3B1O75533 BSCL2-203ENST00000360796 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.182e-7■■■■■ 172.9
SF3B1O75533 BSCL2-206ENST00000405837 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.252e-7■■■■■ 172.9
SF3B1O75533 BSCL2-202ENST00000301781 1712 ntTSL 512.83□□□□□ -0.362e-7■■■■■ 172.9
SF3B1O75533 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.122e-6■■■■■ 172.8
Retrieved 100 of 46,956 protein–RNA pairs in 296.4 ms