RNA–Protein interactions for RNA: ENST00000562303.5

RPAP1-204, Transcript of RNA polymerase II associated protein 1, humanhuman

TSL 1 (best)

Gene RPAP1, Length 5,897 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1-204ENST00000562303 DCAF8L2P0C7V8 631 aa19.61■□□□□ 0.73
RPAP1-204ENST00000562303 SUPT5HO00267 1087 aaKnown RBP18.33■□□□□ 0.53
RPAP1-204ENST00000562303 EHMT2Q96KQ7 1210 aa18.06■□□□□ 0.48
RPAP1-204ENST00000562303 PELP1Q8IZL8 1130 aaKnown RBP17.88■□□□□ 0.45
RPAP1-204ENST00000562303 SHROOM4Q9ULL8 1493 aa17.87■□□□□ 0.45
RPAP1-204ENST00000562303 APLP2Q06481 763 aa17.8■□□□□ 0.44
RPAP1-204ENST00000562303 FAM9AQ8IZU1 332 aaPredicted RBP17.7■□□□□ 0.42
RPAP1-204ENST00000562303 NISCHQ9Y2I1 1504 aa17.45■□□□□ 0.38
RPAP1-204ENST00000562303 TTBK1Q5TCY1 1321 aaPredicted RBP17.44■□□□□ 0.38
RPAP1-204ENST00000562303 RANGAP1P46060 587 aaPredicted RBP17.3■□□□□ 0.36
RPAP1-204ENST00000562303 ATP1B4Q9UN42 357 aaPredicted RBP17.25■□□□□ 0.35
RPAP1-204ENST00000562303 ERICH6Q7L0X2 663 aa17.21■□□□□ 0.35
RPAP1-204ENST00000562303 PCGF6Q9BYE7 350 aa17.16■□□□□ 0.34
RPAP1-204ENST00000562303 CCER1Q8TC90 406 aaPredicted RBP17.11■□□□□ 0.33
RPAP1-204ENST00000562303 CENPBP07199 599 aaPredicted RBP16.98■□□□□ 0.31
RPAP1-204ENST00000562303 TRIM41Q8WV44 630 aa16.94■□□□□ 0.3
RPAP1-204ENST00000562303 UBTFP17480 764 aaKnown RBP16.91■□□□□ 0.3
RPAP1-204ENST00000562303 NEFLP07196 543 aa16.83■□□□□ 0.29
RPAP1-204ENST00000562303 ZEB1P37275 1124 aaPredicted RBP16.83■□□□□ 0.29
RPAP1-204ENST00000562303 MYT1LQ9UL68 1186 aa16.78■□□□□ 0.28
RPAP1-204ENST00000562303 YTHDC1Q96MU7 727 aaKnown RBP16.7■□□□□ 0.26
RPAP1-204ENST00000562303 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.63■□□□□ 0.25
RPAP1-204ENST00000562303 HNRNPUL2Q1KMD3 747 aaKnown RBP16.63■□□□□ 0.25
RPAP1-204ENST00000562303 POLR3GLQ9BT43 218 aa16.58■□□□□ 0.24
RPAP1-204ENST00000562303 PPARGC1BQ86YN6 1023 aaKnown RBP16.54■□□□□ 0.24
RPAP1-204ENST00000562303 DAXXQ9UER7 740 aaPredicted RBP16.52■□□□□ 0.23
RPAP1-204ENST00000562303 ITGAEP38570 1179 aa16.48■□□□□ 0.23
RPAP1-204ENST00000562303 CHIC1Q5VXU3 224 aa16.48■□□□□ 0.23
RPAP1-204ENST00000562303 CNGB1Q14028 1251 aaPredicted RBP16.39■□□□□ 0.21
RPAP1-204ENST00000562303 SLC4A1APQ9BWU0 796 aaKnown RBP16.39■□□□□ 0.21
RPAP1-204ENST00000562303 MYT1Q01538 1121 aa16.31■□□□□ 0.2
RPAP1-204ENST00000562303 TRIM26Q12899 539 aaPredicted RBP16.2■□□□□ 0.18
RPAP1-204ENST00000562303 CLSPNQ9HAW4 1339 aa16.15■□□□□ 0.18
RPAP1-204ENST00000562303 ZNF316A6NFI3 1004 aaPredicted RBP16.09■□□□□ 0.17
RPAP1-204ENST00000562303 HRCP23327 699 aa16.02■□□□□ 0.16
RPAP1-204ENST00000562303 TRIM52Q96A61 297 aa16.01■□□□□ 0.15
RPAP1-204ENST00000562303 FAM50AQ14320 339 aaKnown RBP16■□□□□ 0.15
RPAP1-204ENST00000562303 LOC105371045A0A1W2PR82 267 aa15.96■□□□□ 0.15
RPAP1-204ENST00000562303 RTL5Q5HYW3 569 aaPredicted RBP15.96■□□□□ 0.15
RPAP1-204ENST00000562303 ZBTB47Q9UFB7 747 aaPredicted RBP15.91■□□□□ 0.14
RPAP1-204ENST00000562303 SLC24A1O60721 1099 aa15.91■□□□□ 0.14
RPAP1-204ENST00000562303 ZNF326Q5BKZ1 582 aaKnown RBP15.87■□□□□ 0.13
RPAP1-204ENST00000562303 NEUROD1Q13562 356 aa15.85■□□□□ 0.13
RPAP1-204ENST00000562303 FBLN2P98095 1184 aa15.85■□□□□ 0.13
RPAP1-204ENST00000562303 BCANQ96GW7 911 aa15.85■□□□□ 0.13
RPAP1-204ENST00000562303 BCL11AQ9H165 835 aa15.8■□□□□ 0.12
RPAP1-204ENST00000562303 PABPN1Q86U42 306 aaKnown RBP eCLIP15.76■□□□□ 0.11
RPAP1-204ENST00000562303 DIEXFQ68CQ4 756 aaKnown RBP15.75■□□□□ 0.11
RPAP1-204ENST00000562303 NEFMP07197 916 aa15.74■□□□□ 0.11
RPAP1-204ENST00000562303 CANXP27824 592 aaKnown RBP15.73■□□□□ 0.11
RPAP1-204ENST00000562303 ANP32CO43423 234 aa15.68■□□□□ 0.1
RPAP1-204ENST00000562303 ARID3CA6NKF2 412 aa15.62■□□□□ 0.09
RPAP1-204ENST00000562303 ESF1Q9H501 851 aaKnown RBP15.6■□□□□ 0.09
RPAP1-204ENST00000562303 CDK11AQ9UQ88 783 aaPredicted RBP15.58■□□□□ 0.09
RPAP1-204ENST00000562303 ABCC9O60706 1549 aa15.56■□□□□ 0.08
RPAP1-204ENST00000562303 ZNF777Q9ULD5 760 aaPredicted RBP15.55■□□□□ 0.08
RPAP1-204ENST00000562303 PLPPR3Q6T4P5 718 aa15.54■□□□□ 0.08
RPAP1-204ENST00000562303 P3H3Q8IVL6 736 aa15.53■□□□□ 0.08
RPAP1-204ENST00000562303 STAG3Q9UJ98 1225 aa15.5■□□□□ 0.07
RPAP1-204ENST00000562303 CHGAP10645 457 aaKnown RBP15.46■□□□□ 0.07
RPAP1-204ENST00000562303 NPM1P06748 294 aaKnown RBP eCLIP15.38■□□□□ 0.05
RPAP1-204ENST00000562303 GTF3C3Q9Y5Q9 886 aa15.38■□□□□ 0.05
RPAP1-204ENST00000562303 ANP32AP39687 249 aaKnown RBP15.36■□□□□ 0.05
RPAP1-204ENST00000562303 NPM2Q86SE8 214 aaKnown RBP15.36■□□□□ 0.05
RPAP1-204ENST00000562303 HSP90AA1P07900 732 aaKnown RBP15.34■□□□□ 0.05
RPAP1-204ENST00000562303 ANP32BQ92688 251 aaKnown RBP15.3■□□□□ 0.04
RPAP1-204ENST00000562303 SCAF1Q9H7N4 1312 aaKnown RBP15.28■□□□□ 0.04
RPAP1-204ENST00000562303 A0A0G2JS52 829 aa15.25■□□□□ 0.03
RPAP1-204ENST00000562303 UPF2Q9HAU5 1272 aaKnown RBP15.24■□□□□ 0.03
RPAP1-204ENST00000562303 CSRNP3Q8WYN3 585 aa15.23■□□□□ 0.03
RPAP1-204ENST00000562303 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.22■□□□□ 0.03
RPAP1-204ENST00000562303 TONSLQ96HA7 1378 aa15.2■□□□□ 0.02
RPAP1-204ENST00000562303 SALL2Q9Y467 1007 aaPredicted RBP15.19■□□□□ 0.02
RPAP1-204ENST00000562303 FAM9BQ8IZU0 186 aa15.15■□□□□ 0.02
RPAP1-204ENST00000562303 ZBTB7CA1YPR0 619 aa15.14■□□□□ 0.01
RPAP1-204ENST00000562303 PLEKHG5O94827 1062 aa15.13■□□□□ 0.01
RPAP1-204ENST00000562303 HNRNPUQ00839 825 aaKnown RBP eCLIP15.12■□□□□ 0.01
RPAP1-204ENST00000562303 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.11■□□□□ 0.01
RPAP1-204ENST00000562303 WDR43Q15061 677 aaKnown RBP eCLIP15.11■□□□□ 0.01
RPAP1-204ENST00000562303 CHIC2Q9UKJ5 165 aa15.11■□□□□ 0.01
RPAP1-204ENST00000562303 FKBP8Q14318 412 aa15.1■□□□□ 0.01
RPAP1-204ENST00000562303 CDK11BP21127 795 aaKnown RBP15.1■□□□□ 0.01
RPAP1-204ENST00000562303 C14orf37Q86TY3 774 aa15.09■□□□□ 0.01
RPAP1-204ENST00000562303 TMC1Q8TDI8 760 aa15.09■□□□□ 0.01
RPAP1-204ENST00000562303 EIF5BO60841 1220 aaKnown RBP15.07■□□□□ 0
RPAP1-204ENST00000562303 KDM2AQ9Y2K7 1162 aa15.07■□□□□ 0
RPAP1-204ENST00000562303 TSPY4P0CV99 314 aa15.06■□□□□ 0
RPAP1-204ENST00000562303 TSPY10P0CW01 314 aa15.06■□□□□ 0
RPAP1-204ENST00000562303 SENP3Q9H4L4 574 aaPredicted RBP15.05■□□□□ -0
RPAP1-204ENST00000562303 DDX10Q13206 875 aaKnown RBP15.05■□□□□ -0
RPAP1-204ENST00000562303 MYH16Q9H6N6 1097 aa15.04■□□□□ -0
RPAP1-204ENST00000562303 PPP1R15AO75807 674 aaPredicted RBP15.03■□□□□ -0
RPAP1-204ENST00000562303 ACIN1Q9UKV3 1341 aaKnown RBP15.03■□□□□ -0
RPAP1-204ENST00000562303 CCDC136Q96JN2 1154 aa15.01□□□□□ -0.01
RPAP1-204ENST00000562303 HAP1P54257 671 aaPredicted RBP15□□□□□ -0.01
RPAP1-204ENST00000562303 ARXQ96QS3 562 aa15□□□□□ -0.01
RPAP1-204ENST00000562303 CHMP7Q8WUX9 453 aaPredicted RBP14.98□□□□□ -0.01
RPAP1-204ENST00000562303 MRS2Q9HD23 443 aa14.94□□□□□ -0.02
RPAP1-204ENST00000562303 ARID4BQ4LE39 1312 aaPredicted RBP14.92□□□□□ -0.02
RPAP1-204ENST00000562303 KCNH8Q96L42 1107 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 1311.7 ms