RNA–Protein interactions for RNA: ENST00000467213.5

CHD1L-205, Transcript of chromodomain helicase DNA binding protein 1 like, humanhuman

TSL 1 (best)

Gene CHD1L, Length 2,782 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1L-205ENST00000467213 NISCHQ9Y2I1 1504 aa31.05■■■□□ 2.56
CHD1L-205ENST00000467213 ZCCHC6Q5VYS8 1495 aaKnown RBP26.43■■□□□ 1.82
CHD1L-205ENST00000467213 CCDC180Q9P1Z9 1646 aa26.4■■□□□ 1.82
CHD1L-205ENST00000467213 SHROOM4Q9ULL8 1493 aa26.24■■□□□ 1.79
CHD1L-205ENST00000467213 HRCP23327 699 aa26.07■■□□□ 1.76
CHD1L-205ENST00000467213 SUPT5HO00267 1087 aaKnown RBP26.02■■□□□ 1.76
CHD1L-205ENST00000467213 MYO15BQ96JP2 1530 aa25.87■■□□□ 1.73
CHD1L-205ENST00000467213 CHIC1Q5VXU3 224 aa25.87■■□□□ 1.73
CHD1L-205ENST00000467213 DCAF1Q9Y4B6 1507 aa25.77■■□□□ 1.72
CHD1L-205ENST00000467213 PCGF6Q9BYE7 350 aa25.39■■□□□ 1.66
CHD1L-205ENST00000467213 TRIM26Q12899 539 aaPredicted RBP25.1■■□□□ 1.61
CHD1L-205ENST00000467213 ABCC9O60706 1549 aa25.06■■□□□ 1.6
CHD1L-205ENST00000467213 PPARGC1BQ86YN6 1023 aaKnown RBP25.04■■□□□ 1.6
CHD1L-205ENST00000467213 ZEB1P37275 1124 aaPredicted RBP24.98■■□□□ 1.59
CHD1L-205ENST00000467213 LOC105371045A0A1W2PR82 267 aa24.86■■□□□ 1.57
CHD1L-205ENST00000467213 DCAF8L2P0C7V8 631 aa24.85■■□□□ 1.57
CHD1L-205ENST00000467213 PELP1Q8IZL8 1130 aaKnown RBP24.85■■□□□ 1.57
CHD1L-205ENST00000467213 RSF1Q96T23 1441 aaPredicted RBP24.67■■□□□ 1.54
CHD1L-205ENST00000467213 RB1CC1Q8TDY2 1594 aa24.66■■□□□ 1.54
CHD1L-205ENST00000467213 TRIM41Q8WV44 630 aa24.41■■□□□ 1.5
CHD1L-205ENST00000467213 SCRIBQ14160 1630 aa24.38■■□□□ 1.49
CHD1L-205ENST00000467213 SCAF1Q9H7N4 1312 aaKnown RBP24.22■■□□□ 1.47
CHD1L-205ENST00000467213 NACADO15069 1562 aa24.18■■□□□ 1.46
CHD1L-205ENST00000467213 EIF4G1Q04637 1599 aaKnown RBP24.11■■□□□ 1.45
CHD1L-205ENST00000467213 BAZ1AQ9NRL2 1556 aaPredicted RBP24.04■■□□□ 1.44
CHD1L-205ENST00000467213 MROH2BQ7Z745 1585 aa24.02■■□□□ 1.44
CHD1L-205ENST00000467213 WRNQ14191 1432 aaPredicted RBP eCLIP24■■□□□ 1.43
CHD1L-205ENST00000467213 CECR2Q9BXF3 1484 aa23.94■■□□□ 1.42
CHD1L-205ENST00000467213 ACIN1Q9UKV3 1341 aaKnown RBP23.93■■□□□ 1.42
CHD1L-205ENST00000467213 WIZO95785 1651 aa23.93■■□□□ 1.42
CHD1L-205ENST00000467213 MYT1Q01538 1121 aa23.91■■□□□ 1.42
CHD1L-205ENST00000467213 FAM9AQ8IZU1 332 aaPredicted RBP23.91■■□□□ 1.42
CHD1L-205ENST00000467213 CENPBP07199 599 aaPredicted RBP23.76■■□□□ 1.39
CHD1L-205ENST00000467213 CCER1Q8TC90 406 aaPredicted RBP23.74■■□□□ 1.39
CHD1L-205ENST00000467213 TOP2AP11388 1531 aaKnown RBP23.74■■□□□ 1.39
CHD1L-205ENST00000467213 EEA1Q15075 1411 aa23.73■■□□□ 1.39
CHD1L-205ENST00000467213 NEUROD1Q13562 356 aa23.69■■□□□ 1.38
CHD1L-205ENST00000467213 DIEXFQ68CQ4 756 aaKnown RBP23.67■■□□□ 1.38
CHD1L-205ENST00000467213 TNIKQ9UKE5 1360 aa23.67■■□□□ 1.38
CHD1L-205ENST00000467213 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.66■■□□□ 1.38
CHD1L-205ENST00000467213 CEP162Q5TB80 1403 aa23.61■■□□□ 1.37
CHD1L-205ENST00000467213 SMARCA2P51531 1590 aa23.57■■□□□ 1.36
CHD1L-205ENST00000467213 SMARCA4P51532 1647 aa23.54■■□□□ 1.36
CHD1L-205ENST00000467213 CCDC88BA6NC98 1476 aa23.52■■□□□ 1.36
CHD1L-205ENST00000467213 GTF3C3Q9Y5Q9 886 aa23.51■■□□□ 1.35
CHD1L-205ENST00000467213 ABCC8Q09428 1581 aa23.47■■□□□ 1.35
CHD1L-205ENST00000467213 ZNF316A6NFI3 1004 aaPredicted RBP23.45■■□□□ 1.34
CHD1L-205ENST00000467213 EHMT2Q96KQ7 1210 aa23.42■■□□□ 1.34
CHD1L-205ENST00000467213 GOLGA3Q08378 1498 aa23.42■■□□□ 1.34
CHD1L-205ENST00000467213 KIF21BO75037 1637 aa23.36■■□□□ 1.33
CHD1L-205ENST00000467213 SOGA1O94964 1423 aa23.35■■□□□ 1.33
CHD1L-205ENST00000467213 CSRNP3Q8WYN3 585 aa23.34■■□□□ 1.33
CHD1L-205ENST00000467213 PEG3Q9GZU2 1588 aa23.27■■□□□ 1.31
CHD1L-205ENST00000467213 CEP164Q9UPV0 1460 aa23.25■■□□□ 1.31
CHD1L-205ENST00000467213 UNC13AQ9UPW8 1703 aa23.24■■□□□ 1.31
CHD1L-205ENST00000467213 BAZ1BQ9UIG0 1483 aaKnown RBP23.23■■□□□ 1.31
CHD1L-205ENST00000467213 CLSPNQ9HAW4 1339 aa23.19■■□□□ 1.3
CHD1L-205ENST00000467213 RUSC2Q8N2Y8 1516 aa23.17■■□□□ 1.3
CHD1L-205ENST00000467213 VPS8Q8N3P4 1428 aa23.13■■□□□ 1.29
CHD1L-205ENST00000467213 UBTFP17480 764 aaKnown RBP23.08■■□□□ 1.29
CHD1L-205ENST00000467213 CLIP1P30622 1438 aa23.05■■□□□ 1.28
CHD1L-205ENST00000467213 SYNJ1O43426 1573 aa23.03■■□□□ 1.28
CHD1L-205ENST00000467213 MIER1Q8N108 512 aa23.02■■□□□ 1.28
CHD1L-205ENST00000467213 ERICH3Q5RHP9 1530 aa22.9■■□□□ 1.26
CHD1L-205ENST00000467213 TTBK1Q5TCY1 1321 aaPredicted RBP22.89■■□□□ 1.25
CHD1L-205ENST00000467213 BICRAQ9NZM4 1560 aa22.87■■□□□ 1.25
CHD1L-205ENST00000467213 TOP2BQ02880 1626 aa22.85■■□□□ 1.25
CHD1L-205ENST00000467213 CUX2O14529 1486 aa22.84■■□□□ 1.25
CHD1L-205ENST00000467213 BIVM-ERCC5R4GMW8 1640 aa22.83■■□□□ 1.25
CHD1L-205ENST00000467213 RAPGEF2Q9Y4G8 1499 aa22.82■■□□□ 1.24
CHD1L-205ENST00000467213 YTHDC1Q96MU7 727 aaKnown RBP22.82■■□□□ 1.24
CHD1L-205ENST00000467213 HNRNPUL2Q1KMD3 747 aaKnown RBP22.81■■□□□ 1.24
CHD1L-205ENST00000467213 APLP2Q06481 763 aa22.8■■□□□ 1.24
CHD1L-205ENST00000467213 DHX57Q6P158 1386 aaKnown RBP22.79■■□□□ 1.24
CHD1L-205ENST00000467213 RRBP1Q9P2E9 1410 aaKnown RBP22.75■■□□□ 1.23
CHD1L-205ENST00000467213 PRXQ9BXM0 1461 aa22.73■■□□□ 1.23
CHD1L-205ENST00000467213 ATAD2BQ9ULI0 1458 aa22.73■■□□□ 1.23
CHD1L-205ENST00000467213 ARAP1Q96P48 1450 aa22.68■■□□□ 1.22
CHD1L-205ENST00000467213 SUPT16HQ9Y5B9 1047 aaKnown RBP22.62■■□□□ 1.21
CHD1L-205ENST00000467213 MAP3K1Q13233 1512 aa22.57■■□□□ 1.2
CHD1L-205ENST00000467213 CCNB3Q8WWL7 1395 aa22.47■■□□□ 1.19
CHD1L-205ENST00000467213 HMGXB3Q12766 1538 aa22.43■■□□□ 1.18
CHD1L-205ENST00000467213 KIF27Q86VH2 1401 aa22.42■■□□□ 1.18
CHD1L-205ENST00000467213 TSHZ2Q9NRE2 1034 aa22.4■■□□□ 1.18
CHD1L-205ENST00000467213 MAPKBP1O60336 1514 aa22.39■■□□□ 1.18
CHD1L-205ENST00000467213 KANK4Q5T7N3 995 aaPredicted RBP22.38■■□□□ 1.17
CHD1L-205ENST00000467213 ARHGAP35Q9NRY4 1499 aa22.38■■□□□ 1.17
CHD1L-205ENST00000467213 CUX1P39880 1505 aa22.37■■□□□ 1.17
CHD1L-205ENST00000467213 TIMELESSQ9UNS1 1208 aa22.36■■□□□ 1.17
CHD1L-205ENST00000467213 ANP32EQ9BTT0 268 aa22.34■■□□□ 1.17
CHD1L-205ENST00000467213 TIAM1Q13009 1591 aa22.33■■□□□ 1.17
CHD1L-205ENST00000467213 PRDM2Q13029 1718 aa22.33■■□□□ 1.16
CHD1L-205ENST00000467213 PABPN1Q86U42 306 aaKnown RBP eCLIP22.3■■□□□ 1.162e-6■■□□□ 13.5
CHD1L-205ENST00000467213 NCAPD3P42695 1498 aa22.3■■□□□ 1.16
CHD1L-205ENST00000467213 RAB3GAP2Q9H2M9 1393 aa22.27■■□□□ 1.16
CHD1L-205ENST00000467213 SETD5Q9C0A6 1442 aa22.26■■□□□ 1.15
CHD1L-205ENST00000467213 CFAP43Q8NDM7 1665 aa22.24■■□□□ 1.15
CHD1L-205ENST00000467213 CFTRP13569 1480 aa22.24■■□□□ 1.15
CHD1L-205ENST00000467213 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.21■■□□□ 1.15
CHD1L-205ENST00000467213 LRRC9Q6ZRR7 1453 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 127.7 ms