RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 SLC24A1O60721 1099 aa16.33■□□□□ 0.2
VPS13D-212ENST00000543766 PELP1Q8IZL8 1130 aaKnown RBP16.07■□□□□ 0.16
VPS13D-212ENST00000543766 MYT1Q01538 1121 aa16.04■□□□□ 0.16
VPS13D-212ENST00000543766 NISCHQ9Y2I1 1504 aa15.83■□□□□ 0.13
VPS13D-212ENST00000543766 PRKCSHP14314 528 aaPredicted RBP15.71■□□□□ 0.1
VPS13D-212ENST00000543766 ERICH6Q7L0X2 663 aa15.44■□□□□ 0.06
VPS13D-212ENST00000543766 TTBK1Q5TCY1 1321 aaPredicted RBP15.42■□□□□ 0.06
VPS13D-212ENST00000543766 DAXXQ9UER7 740 aaPredicted RBP15.04■□□□□ -0
VPS13D-212ENST00000543766 APLP2Q06481 763 aa14.99□□□□□ -0.01
VPS13D-212ENST00000543766 EHMT2Q96KQ7 1210 aa14.85□□□□□ -0.03
VPS13D-212ENST00000543766 BCL11AQ9H165 835 aa14.82□□□□□ -0.04
VPS13D-212ENST00000543766 EIF5BO60841 1220 aaKnown RBP14.8□□□□□ -0.04
VPS13D-212ENST00000543766 CCDC180Q9P1Z9 1646 aa14.61□□□□□ -0.07
VPS13D-212ENST00000543766 PLPPR3Q6T4P5 718 aa14.61□□□□□ -0.07
VPS13D-212ENST00000543766 PLEKHG5O94827 1062 aa14.56□□□□□ -0.08
VPS13D-212ENST00000543766 FAM9AQ8IZU1 332 aaPredicted RBP14.51□□□□□ -0.09
VPS13D-212ENST00000543766 RTN4Q9NQC3 1192 aaKnown RBP14.39□□□□□ -0.11
VPS13D-212ENST00000543766 CHIC1Q5VXU3 224 aa14.38□□□□□ -0.11
VPS13D-212ENST00000543766 AEBP2Q6ZN18 517 aaPredicted RBP14.29□□□□□ -0.12
VPS13D-212ENST00000543766 RANGAP1P46060 587 aaPredicted RBP14.26□□□□□ -0.13
VPS13D-212ENST00000543766 PODXL2Q9NZ53 605 aa14.19□□□□□ -0.14
VPS13D-212ENST00000543766 NCBP3Q53F19 620 aaKnown RBP14.17□□□□□ -0.14
VPS13D-212ENST00000543766 KLHL34Q8N239 644 aa14.16□□□□□ -0.14
VPS13D-212ENST00000543766 TIMELESSQ9UNS1 1208 aa14.07□□□□□ -0.16
VPS13D-212ENST00000543766 HRCP23327 699 aa14.05□□□□□ -0.16
VPS13D-212ENST00000543766 CENPBP07199 599 aaPredicted RBP14□□□□□ -0.17
VPS13D-212ENST00000543766 TULP1O00294 542 aaPredicted RBP13.99□□□□□ -0.17
VPS13D-212ENST00000543766 SCAF1Q9H7N4 1312 aaKnown RBP13.97□□□□□ -0.17
VPS13D-212ENST00000543766 ANO8Q9HCE9 1232 aaPredicted RBP13.78□□□□□ -0.2
VPS13D-212ENST00000543766 ARXQ96QS3 562 aa13.74□□□□□ -0.21
VPS13D-212ENST00000543766 MYO15BQ96JP2 1530 aa13.72□□□□□ -0.21
VPS13D-212ENST00000543766 PKNOX2Q96KN3 472 aa13.69□□□□□ -0.22
VPS13D-212ENST00000543766 HAP1P54257 671 aaPredicted RBP13.66□□□□□ -0.22
VPS13D-212ENST00000543766 PDIA4P13667 645 aaKnown RBP13.64□□□□□ -0.23
VPS13D-212ENST00000543766 PDE4CQ08493 712 aa13.62□□□□□ -0.23
VPS13D-212ENST00000543766 UNC13AQ9UPW8 1703 aa13.61□□□□□ -0.23
VPS13D-212ENST00000543766 UBE2Q2Q8WVN8 375 aa13.59□□□□□ -0.23
VPS13D-212ENST00000543766 PPARGC1BQ86YN6 1023 aaKnown RBP13.58□□□□□ -0.23
VPS13D-212ENST00000543766 CCDC136Q96JN2 1154 aa13.58□□□□□ -0.23
VPS13D-212ENST00000543766 HOMEZQ8IX15 550 aa13.56□□□□□ -0.24
VPS13D-212ENST00000543766 C14orf37Q86TY3 774 aa13.55□□□□□ -0.24
VPS13D-212ENST00000543766 A0A0U1RQG5 324 aaPredicted RBP13.53□□□□□ -0.24
VPS13D-212ENST00000543766 NEFLP07196 543 aa13.52□□□□□ -0.25
VPS13D-212ENST00000543766 DHX37Q8IY37 1157 aaKnown RBP13.47□□□□□ -0.25
VPS13D-212ENST00000543766 ANP32EQ9BTT0 268 aa13.47□□□□□ -0.25
VPS13D-212ENST00000543766 CSRNP3Q8WYN3 585 aa13.46□□□□□ -0.26
VPS13D-212ENST00000543766 TPRNQ4KMQ1 711 aa13.45□□□□□ -0.26
VPS13D-212ENST00000543766 NPM2Q86SE8 214 aaKnown RBP13.45□□□□□ -0.26
VPS13D-212ENST00000543766 DCAF1Q9Y4B6 1507 aa13.44□□□□□ -0.26
VPS13D-212ENST00000543766 AMER1Q5JTC6 1135 aaPredicted RBP13.43□□□□□ -0.26
VPS13D-212ENST00000543766 ZCCHC6Q5VYS8 1495 aaKnown RBP13.42□□□□□ -0.26
VPS13D-212ENST00000543766 NACADO15069 1562 aa13.41□□□□□ -0.26
VPS13D-212ENST00000543766 BCL11BQ9C0K0 894 aaPredicted RBP13.4□□□□□ -0.26
VPS13D-212ENST00000543766 SHROOM4Q9ULL8 1493 aa13.37□□□□□ -0.27
VPS13D-212ENST00000543766 KCNA4P22459 653 aa13.36□□□□□ -0.27
VPS13D-212ENST00000543766 TAOK2Q9UL54 1235 aa13.36□□□□□ -0.27
VPS13D-212ENST00000543766 GTF3C3Q9Y5Q9 886 aa13.35□□□□□ -0.27
VPS13D-212ENST00000543766 PHF23Q9BUL5 403 aaPredicted RBP13.32□□□□□ -0.28
VPS13D-212ENST00000543766 RB1CC1Q8TDY2 1594 aa13.31□□□□□ -0.28
VPS13D-212ENST00000543766 CHMP4AQ9BY43 222 aa13.3□□□□□ -0.28
VPS13D-212ENST00000543766 PCGF6Q9BYE7 350 aa13.29□□□□□ -0.28
VPS13D-212ENST00000543766 SALL2Q9Y467 1007 aaPredicted RBP13.29□□□□□ -0.28
VPS13D-212ENST00000543766 BICRAQ9NZM4 1560 aa13.28□□□□□ -0.28
VPS13D-212ENST00000543766 ZEB1P37275 1124 aaPredicted RBP13.28□□□□□ -0.28
VPS13D-212ENST00000543766 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.26□□□□□ -0.29
VPS13D-212ENST00000543766 ABCC9O60706 1549 aa13.25□□□□□ -0.29
VPS13D-212ENST00000543766 POLR3GLQ9BT43 218 aa13.2□□□□□ -0.3
VPS13D-212ENST00000543766 LOC105371045A0A1W2PR82 267 aa13.18□□□□□ -0.3
VPS13D-212ENST00000543766 IRX6P78412 446 aaPredicted RBP13.17□□□□□ -0.3
VPS13D-212ENST00000543766 PAXIP1Q6ZW49 1069 aaPredicted RBP13.16□□□□□ -0.3
VPS13D-212ENST00000543766 SUPT5HO00267 1087 aaKnown RBP13.14□□□□□ -0.31
VPS13D-212ENST00000543766 DCAF8L2P0C7V8 631 aa13.13□□□□□ -0.31
VPS13D-212ENST00000543766 ACIN1Q9UKV3 1341 aaKnown RBP13.12□□□□□ -0.31
VPS13D-212ENST00000543766 TAF7LQ5H9L4 462 aa13.12□□□□□ -0.31
VPS13D-212ENST00000543766 DEKP35659 375 aaKnown RBP13.08□□□□□ -0.32
VPS13D-212ENST00000543766 CFAP44Q96MT7 982 aa13.07□□□□□ -0.32
VPS13D-212ENST00000543766 FGD1P98174 961 aa13.07□□□□□ -0.32
VPS13D-212ENST00000543766 MYT1LQ9UL68 1186 aa13.05□□□□□ -0.32
VPS13D-212ENST00000543766 NEUROD1Q13562 356 aa13.04□□□□□ -0.32
VPS13D-212ENST00000543766 TRIM26Q12899 539 aaPredicted RBP13.01□□□□□ -0.33
VPS13D-212ENST00000543766 CDK11BP21127 795 aaKnown RBP13□□□□□ -0.33
VPS13D-212ENST00000543766 CDK11AQ9UQ88 783 aaPredicted RBP13□□□□□ -0.33
VPS13D-212ENST00000543766 CLSPNQ9HAW4 1339 aa12.98□□□□□ -0.33
VPS13D-212ENST00000543766 GLIPR1L2Q4G1C9 344 aa12.98□□□□□ -0.33
VPS13D-212ENST00000543766 BRD2P25440 801 aaKnown RBP12.97□□□□□ -0.33
VPS13D-212ENST00000543766 BCANQ96GW7 911 aa12.96□□□□□ -0.33
VPS13D-212ENST00000543766 SAMD1Q6SPF0 538 aaPredicted RBP12.96□□□□□ -0.33
VPS13D-212ENST00000543766 NAP1L5Q96NT1 182 aaPredicted RBP12.94□□□□□ -0.34
VPS13D-212ENST00000543766 VSIG10Q8N0Z9 540 aa12.9□□□□□ -0.34
VPS13D-212ENST00000543766 RBM10P98175 930 aaKnown RBP12.89□□□□□ -0.35
VPS13D-212ENST00000543766 UBTFP17480 764 aaKnown RBP12.82□□□□□ -0.36
VPS13D-212ENST00000543766 AAMPQ13685 434 aa12.81□□□□□ -0.36
VPS13D-212ENST00000543766 ZMYND15Q9H091 742 aa12.81□□□□□ -0.36
VPS13D-212ENST00000543766 ZNF326Q5BKZ1 582 aaKnown RBP12.68□□□□□ -0.38
VPS13D-212ENST00000543766 ERICH6BQ5W0A0 696 aa12.66□□□□□ -0.38
VPS13D-212ENST00000543766 TMEM132AQ24JP5 1023 aa12.64□□□□□ -0.39
VPS13D-212ENST00000543766 PRDM10Q9NQV6 1147 aa12.63□□□□□ -0.39
VPS13D-212ENST00000543766 FBXO3Q9UK99 471 aa12.63□□□□□ -0.39
VPS13D-212ENST00000543766 EIF4G1Q04637 1599 aaKnown RBP12.62□□□□□ -0.39
VPS13D-212ENST00000543766 PEG3Q9GZU2 1588 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms