RNA–Protein interactions for RNA: ENST00000369258.8

CHD1L-202, Transcript of chromodomain helicase DNA binding protein 1 like, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD1L, Length 2,967 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1L-202ENST00000369258 NISCHQ9Y2I1 1504 aa25.38■■□□□ 1.65
CHD1L-202ENST00000369258 SHROOM4Q9ULL8 1493 aa22.86■■□□□ 1.25
CHD1L-202ENST00000369258 SUPT5HO00267 1087 aaKnown RBP22.53■■□□□ 1.2
CHD1L-202ENST00000369258 DCAF8L2P0C7V8 631 aa22.05■■□□□ 1.12
CHD1L-202ENST00000369258 MYO15BQ96JP2 1530 aa21.75■■□□□ 1.07
CHD1L-202ENST00000369258 PCGF6Q9BYE7 350 aa21.65■■□□□ 1.06
CHD1L-202ENST00000369258 CHIC1Q5VXU3 224 aa21.65■■□□□ 1.06
CHD1L-202ENST00000369258 PPARGC1BQ86YN6 1023 aaKnown RBP21.58■■□□□ 1.05
CHD1L-202ENST00000369258 HRCP23327 699 aa21.46■■□□□ 1.03
CHD1L-202ENST00000369258 ZCCHC6Q5VYS8 1495 aaKnown RBP21.45■■□□□ 1.02
CHD1L-202ENST00000369258 LOC105371045A0A1W2PR82 267 aa21.45■■□□□ 1.02
CHD1L-202ENST00000369258 EHMT2Q96KQ7 1210 aa21.19■□□□□ 0.98
CHD1L-202ENST00000369258 CCDC180Q9P1Z9 1646 aa21.17■□□□□ 0.98
CHD1L-202ENST00000369258 FAM9AQ8IZU1 332 aaPredicted RBP20.97■□□□□ 0.95
CHD1L-202ENST00000369258 DCAF1Q9Y4B6 1507 aa20.79■□□□□ 0.92
CHD1L-202ENST00000369258 TRIM26Q12899 539 aaPredicted RBP20.69■□□□□ 0.9
CHD1L-202ENST00000369258 TRIM41Q8WV44 630 aa20.62■□□□□ 0.89
CHD1L-202ENST00000369258 TTBK1Q5TCY1 1321 aaPredicted RBP20.49■□□□□ 0.87
CHD1L-202ENST00000369258 SCRIBQ14160 1630 aa20.47■□□□□ 0.87
CHD1L-202ENST00000369258 RSF1Q96T23 1441 aaPredicted RBP20.4■□□□□ 0.86
CHD1L-202ENST00000369258 ZEB1P37275 1124 aaPredicted RBP20.33■□□□□ 0.85
CHD1L-202ENST00000369258 RB1CC1Q8TDY2 1594 aa20.33■□□□□ 0.85
CHD1L-202ENST00000369258 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.29■□□□□ 0.84
CHD1L-202ENST00000369258 ABCC9O60706 1549 aa20.27■□□□□ 0.84
CHD1L-202ENST00000369258 SCAF1Q9H7N4 1312 aaKnown RBP20.24■□□□□ 0.83
CHD1L-202ENST00000369258 CECR2Q9BXF3 1484 aa20.18■□□□□ 0.82
CHD1L-202ENST00000369258 CCER1Q8TC90 406 aaPredicted RBP20.05■□□□□ 0.8
CHD1L-202ENST00000369258 PELP1Q8IZL8 1130 aaKnown RBP20■□□□□ 0.79
CHD1L-202ENST00000369258 MROH2BQ7Z745 1585 aa19.99■□□□□ 0.79
CHD1L-202ENST00000369258 WIZO95785 1651 aa19.92■□□□□ 0.78
CHD1L-202ENST00000369258 NEUROD1Q13562 356 aa19.9■□□□□ 0.78
CHD1L-202ENST00000369258 RANGAP1P46060 587 aaPredicted RBP19.8■□□□□ 0.76
CHD1L-202ENST00000369258 ABCC8Q09428 1581 aa19.78■□□□□ 0.76
CHD1L-202ENST00000369258 DIEXFQ68CQ4 756 aaKnown RBP19.76■□□□□ 0.75
CHD1L-202ENST00000369258 YTHDC1Q96MU7 727 aaKnown RBP19.76■□□□□ 0.75
CHD1L-202ENST00000369258 GTF3C3Q9Y5Q9 886 aa19.73■□□□□ 0.75
CHD1L-202ENST00000369258 UBTFP17480 764 aaKnown RBP19.72■□□□□ 0.75
CHD1L-202ENST00000369258 ACIN1Q9UKV3 1341 aaKnown RBP19.71■□□□□ 0.75
CHD1L-202ENST00000369258 CCDC88BA6NC98 1476 aa19.7■□□□□ 0.74
CHD1L-202ENST00000369258 SOGA1O94964 1423 aa19.67■□□□□ 0.74
CHD1L-202ENST00000369258 HNRNPUL2Q1KMD3 747 aaKnown RBP19.64■□□□□ 0.73
CHD1L-202ENST00000369258 RUSC2Q8N2Y8 1516 aa19.64■□□□□ 0.73
CHD1L-202ENST00000369258 PABPN1Q86U42 306 aaKnown RBP eCLIP19.61■□□□□ 0.732e-6■■□□□ 13.5
CHD1L-202ENST00000369258 NACADO15069 1562 aa19.58■□□□□ 0.72
CHD1L-202ENST00000369258 CEP162Q5TB80 1403 aa19.56■□□□□ 0.72
CHD1L-202ENST00000369258 CENPBP07199 599 aaPredicted RBP19.5■□□□□ 0.71
CHD1L-202ENST00000369258 CSRNP3Q8WYN3 585 aa19.47■□□□□ 0.71
CHD1L-202ENST00000369258 BAZ1AQ9NRL2 1556 aaPredicted RBP19.45■□□□□ 0.7
CHD1L-202ENST00000369258 MIER1Q8N108 512 aa19.41■□□□□ 0.7
CHD1L-202ENST00000369258 EIF4G1Q04637 1599 aaKnown RBP19.4■□□□□ 0.7
CHD1L-202ENST00000369258 WRNQ14191 1432 aaPredicted RBP eCLIP19.4■□□□□ 0.7
CHD1L-202ENST00000369258 ZNF316A6NFI3 1004 aaPredicted RBP19.37■□□□□ 0.69
CHD1L-202ENST00000369258 SMARCA2P51531 1590 aa19.31■□□□□ 0.68
CHD1L-202ENST00000369258 TNIKQ9UKE5 1360 aa19.31■□□□□ 0.68
CHD1L-202ENST00000369258 TOP2AP11388 1531 aaKnown RBP19.27■□□□□ 0.67
CHD1L-202ENST00000369258 SMARCA4P51532 1647 aa19.24■□□□□ 0.67
CHD1L-202ENST00000369258 EEA1Q15075 1411 aa19.2■□□□□ 0.66
CHD1L-202ENST00000369258 ITGAEP38570 1179 aa19.15■□□□□ 0.66
CHD1L-202ENST00000369258 APLP2Q06481 763 aa19.14■□□□□ 0.66
CHD1L-202ENST00000369258 GOLGA3Q08378 1498 aa19.12■□□□□ 0.65
CHD1L-202ENST00000369258 CLIP1P30622 1438 aa19.11■□□□□ 0.65
CHD1L-202ENST00000369258 MYT1Q01538 1121 aa19.1■□□□□ 0.65
CHD1L-202ENST00000369258 UNC13AQ9UPW8 1703 aa19.09■□□□□ 0.65
CHD1L-202ENST00000369258 RAPGEF2Q9Y4G8 1499 aa19.07■□□□□ 0.64
CHD1L-202ENST00000369258 SYNJ1O43426 1573 aa19.06■□□□□ 0.64
CHD1L-202ENST00000369258 KANK4Q5T7N3 995 aaPredicted RBP19.05■□□□□ 0.64
CHD1L-202ENST00000369258 KCNH8Q96L42 1107 aa18.98■□□□□ 0.63
CHD1L-202ENST00000369258 CEP164Q9UPV0 1460 aa18.96■□□□□ 0.63
CHD1L-202ENST00000369258 VPS8Q8N3P4 1428 aa18.92■□□□□ 0.62
CHD1L-202ENST00000369258 HIRIP3Q9BW71 556 aaPredicted RBP18.86■□□□□ 0.61
CHD1L-202ENST00000369258 BICRAQ9NZM4 1560 aa18.85■□□□□ 0.61
CHD1L-202ENST00000369258 KIF21BO75037 1637 aa18.85■□□□□ 0.61
CHD1L-202ENST00000369258 BCANQ96GW7 911 aa18.84■□□□□ 0.61
CHD1L-202ENST00000369258 DHX57Q6P158 1386 aaKnown RBP18.83■□□□□ 0.6
CHD1L-202ENST00000369258 ATP1B4Q9UN42 357 aaPredicted RBP18.79■□□□□ 0.6
CHD1L-202ENST00000369258 SUPT16HQ9Y5B9 1047 aaKnown RBP18.78■□□□□ 0.6
CHD1L-202ENST00000369258 BAZ1BQ9UIG0 1483 aaKnown RBP18.78■□□□□ 0.6
CHD1L-202ENST00000369258 ATAD2BQ9ULI0 1458 aa18.77■□□□□ 0.6
CHD1L-202ENST00000369258 P3H3Q8IVL6 736 aa18.77■□□□□ 0.59
CHD1L-202ENST00000369258 SIN3AQ96ST3 1273 aa18.72■□□□□ 0.59
CHD1L-202ENST00000369258 ARAP1Q96P48 1450 aa18.72■□□□□ 0.59
CHD1L-202ENST00000369258 CLSPNQ9HAW4 1339 aa18.71■□□□□ 0.59
CHD1L-202ENST00000369258 PEG3Q9GZU2 1588 aa18.69■□□□□ 0.58
CHD1L-202ENST00000369258 DDX10Q13206 875 aaKnown RBP18.67■□□□□ 0.58
CHD1L-202ENST00000369258 FAM50AQ14320 339 aaKnown RBP18.65■□□□□ 0.58
CHD1L-202ENST00000369258 TRIM52Q96A61 297 aa18.58■□□□□ 0.56
CHD1L-202ENST00000369258 TSHZ2Q9NRE2 1034 aa18.56■□□□□ 0.56
CHD1L-202ENST00000369258 CCNB3Q8WWL7 1395 aa18.55■□□□□ 0.56
CHD1L-202ENST00000369258 RAB3GAP2Q9H2M9 1393 aa18.55■□□□□ 0.56
CHD1L-202ENST00000369258 TOP2BQ02880 1626 aa18.54■□□□□ 0.56
CHD1L-202ENST00000369258 PRXQ9BXM0 1461 aa18.54■□□□□ 0.56
CHD1L-202ENST00000369258 FKBP8Q14318 412 aa18.52■□□□□ 0.56
CHD1L-202ENST00000369258 CUX1P39880 1505 aa18.51■□□□□ 0.55
CHD1L-202ENST00000369258 ARHGAP35Q9NRY4 1499 aa18.5■□□□□ 0.55
CHD1L-202ENST00000369258 ERICH3Q5RHP9 1530 aa18.49■□□□□ 0.55
CHD1L-202ENST00000369258 RRBP1Q9P2E9 1410 aaKnown RBP18.48■□□□□ 0.55
CHD1L-202ENST00000369258 KIF27Q86VH2 1401 aa18.44■□□□□ 0.54
CHD1L-202ENST00000369258 PHLDB1Q86UU1 1377 aa18.43■□□□□ 0.54
CHD1L-202ENST00000369258 IRX6P78412 446 aaPredicted RBP18.41■□□□□ 0.54
CHD1L-202ENST00000369258 BIVM-ERCC5R4GMW8 1640 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms