Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RFC3P40938 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
RFC3P40938 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RFC3P40938 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RFC3P40938 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RFC3P40938 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RFC3P40938 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RFC3P40938 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RFC3P40938 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
RFC3P40938 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
RFC3P40938 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
RFC3P40938 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC12.54□□□□□ -0.4
RFC3P40938 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RFC3P40938 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
RFC3P40938 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
RFC3P40938 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
RFC3P40938 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
RFC3P40938 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.53□□□□□ -0.4
RFC3P40938 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
RFC3P40938 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
RFC3P40938 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 RHOC-205ENST00000369636 786 ntTSL 2 BASIC12.53□□□□□ -0.4
RFC3P40938 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
RFC3P40938 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC12.53□□□□□ -0.4
RFC3P40938 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC12.53□□□□□ -0.4
RFC3P40938 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC12.53□□□□□ -0.4
RFC3P40938 KRT18P46-201ENST00000435568 1279 ntBASIC12.53□□□□□ -0.4
RFC3P40938 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC12.53□□□□□ -0.4
RFC3P40938 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC12.53□□□□□ -0.4
RFC3P40938 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC12.53□□□□□ -0.4
RFC3P40938 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC12.53□□□□□ -0.4
RFC3P40938 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC12.53□□□□□ -0.4
RFC3P40938 FOXN3-AS2-201ENST00000554071 1262 ntBASIC12.53□□□□□ -0.4
RFC3P40938 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC12.53□□□□□ -0.4
RFC3P40938 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
RFC3P40938 THY1-209ENST00000580275 578 ntTSL 3 BASIC12.53□□□□□ -0.4
RFC3P40938 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC12.53□□□□□ -0.4
RFC3P40938 AC010632.2-201ENST00000588369 1224 ntBASIC12.53□□□□□ -0.4
RFC3P40938 MIR8071-1-201ENST00000616769 65 ntBASIC12.53□□□□□ -0.4
RFC3P40938 MIR8071-2-201ENST00000616772 65 ntBASIC12.53□□□□□ -0.4
RFC3P40938 GARS-210ENST00000627489 324 ntTSL 4 BASIC12.53□□□□□ -0.4
RFC3P40938 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC12.53□□□□□ -0.4
RFC3P40938 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 PXK-210ENST00000479241 2817 ntTSL 2 BASIC12.53□□□□□ -0.4
RFC3P40938 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
RFC3P40938 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
RFC3P40938 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC12.53□□□□□ -0.4
RFC3P40938 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
RFC3P40938 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
RFC3P40938 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
RFC3P40938 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC12.53□□□□□ -0.4
RFC3P40938 FTO-214ENST00000636218 2227 ntTSL 5 BASIC12.53□□□□□ -0.4
RFC3P40938 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC12.53□□□□□ -0.4
RFC3P40938 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC12.53□□□□□ -0.4
RFC3P40938 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
RFC3P40938 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RFC3P40938 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC12.53□□□□□ -0.4
RFC3P40938 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
RFC3P40938 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RFC3P40938 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.4
RFC3P40938 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RFC3P40938 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC12.52□□□□□ -0.4
RFC3P40938 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC12.52□□□□□ -0.4
RFC3P40938 STK3-218ENST00000617590 2485 ntTSL 5 BASIC12.52□□□□□ -0.4
RFC3P40938 AC130686.1-201ENST00000622936 2466 ntBASIC12.52□□□□□ -0.4
RFC3P40938 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
RFC3P40938 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC12.52□□□□□ -0.4
RFC3P40938 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
RFC3P40938 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RFC3P40938 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RFC3P40938 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
RFC3P40938 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC12.52□□□□□ -0.41
RFC3P40938 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC12.52□□□□□ -0.41
RFC3P40938 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RFC3P40938 NHP2-202ENST00000314397 599 ntTSL 2 BASIC12.52□□□□□ -0.41
RFC3P40938 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
RFC3P40938 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RFC3P40938 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RFC3P40938 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RFC3P40938 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RFC3P40938 GGTLC4P-201ENST00000402176 664 ntBASIC12.52□□□□□ -0.41
RFC3P40938 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms