RNA–Protein interactions for RNA: ENST00000302190.8

SDC2-201, Transcript of syndecan 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC2, Length 3,759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-201ENST00000302190 NISCHQ9Y2I1 1504 aa28.32■■■□□ 2.12
SDC2-201ENST00000302190 DCAF8L2P0C7V8 631 aa24.63■■□□□ 1.53
SDC2-201ENST00000302190 SHROOM4Q9ULL8 1493 aa24.34■■□□□ 1.49
SDC2-201ENST00000302190 SUPT5HO00267 1087 aaKnown RBP24.31■■□□□ 1.48
SDC2-201ENST00000302190 CCDC180Q9P1Z9 1646 aa24.26■■□□□ 1.47
SDC2-201ENST00000302190 ABCC9O60706 1549 aa23.98■■□□□ 1.43
SDC2-201ENST00000302190 ZCCHC6Q5VYS8 1495 aaKnown RBP23.69■■□□□ 1.38
SDC2-201ENST00000302190 EHMT2Q96KQ7 1210 aa23.23■■□□□ 1.31
SDC2-201ENST00000302190 PCGF6Q9BYE7 350 aa23.09■■□□□ 1.29
SDC2-201ENST00000302190 SCRIBQ14160 1630 aa23.08■■□□□ 1.28
SDC2-201ENST00000302190 PABPN1Q86U42 306 aaKnown RBP eCLIP22.93■■□□□ 1.26
SDC2-201ENST00000302190 DCAF1Q9Y4B6 1507 aa22.91■■□□□ 1.26
SDC2-201ENST00000302190 FAM9AQ8IZU1 332 aaPredicted RBP22.79■■□□□ 1.24
SDC2-201ENST00000302190 NACADO15069 1562 aa22.78■■□□□ 1.24
SDC2-201ENST00000302190 RB1CC1Q8TDY2 1594 aa22.72■■□□□ 1.23
SDC2-201ENST00000302190 CHIC1Q5VXU3 224 aa22.59■■□□□ 1.21
SDC2-201ENST00000302190 LOC105371045A0A1W2PR82 267 aa22.57■■□□□ 1.2
SDC2-201ENST00000302190 MYO15BQ96JP2 1530 aa22.54■■□□□ 1.2
SDC2-201ENST00000302190 PPARGC1BQ86YN6 1023 aaKnown RBP22.47■■□□□ 1.19
SDC2-201ENST00000302190 TTBK1Q5TCY1 1321 aaPredicted RBP22.42■■□□□ 1.18
SDC2-201ENST00000302190 CECR2Q9BXF3 1484 aa22.41■■□□□ 1.18
SDC2-201ENST00000302190 HRCP23327 699 aa22.38■■□□□ 1.17
SDC2-201ENST00000302190 UNC13AQ9UPW8 1703 aa22.37■■□□□ 1.17
SDC2-201ENST00000302190 PELP1Q8IZL8 1130 aaKnown RBP22.33■■□□□ 1.17
SDC2-201ENST00000302190 TRIM41Q8WV44 630 aa22.25■■□□□ 1.15
SDC2-201ENST00000302190 BICRAQ9NZM4 1560 aa22.15■■□□□ 1.14
SDC2-201ENST00000302190 RSF1Q96T23 1441 aaPredicted RBP22.15■■□□□ 1.14
SDC2-201ENST00000302190 MROH2BQ7Z745 1585 aa22.12■■□□□ 1.13
SDC2-201ENST00000302190 WIZO95785 1651 aa21.97■■□□□ 1.11
SDC2-201ENST00000302190 TRIM26Q12899 539 aaPredicted RBP21.93■■□□□ 1.1
SDC2-201ENST00000302190 RANGAP1P46060 587 aaPredicted RBP21.85■■□□□ 1.09
SDC2-201ENST00000302190 CCER1Q8TC90 406 aaPredicted RBP21.8■■□□□ 1.08
SDC2-201ENST00000302190 BAZ1AQ9NRL2 1556 aaPredicted RBP21.79■■□□□ 1.08
SDC2-201ENST00000302190 SMARCA4P51532 1647 aa21.76■■□□□ 1.07
SDC2-201ENST00000302190 MYT1Q01538 1121 aa21.67■■□□□ 1.06
SDC2-201ENST00000302190 ZEB1P37275 1124 aaPredicted RBP21.63■■□□□ 1.05
SDC2-201ENST00000302190 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.58■■□□□ 1.05
SDC2-201ENST00000302190 UBTFP17480 764 aaKnown RBP21.58■■□□□ 1.04
SDC2-201ENST00000302190 DNAJC5BQ9UF47 199 aa21.57■■□□□ 1.04
SDC2-201ENST00000302190 EIF4G1Q04637 1599 aaKnown RBP21.56■■□□□ 1.04
SDC2-201ENST00000302190 ATAD2BQ9ULI0 1458 aa21.52■■□□□ 1.04
SDC2-201ENST00000302190 YTHDC1Q96MU7 727 aaKnown RBP21.48■■□□□ 1.03
SDC2-201ENST00000302190 CCDC88BA6NC98 1476 aa21.47■■□□□ 1.03
SDC2-201ENST00000302190 BAZ1BQ9UIG0 1483 aaKnown RBP21.47■■□□□ 1.03
SDC2-201ENST00000302190 APLP2Q06481 763 aa21.42■■□□□ 1.02
SDC2-201ENST00000302190 TOP2AP11388 1531 aaKnown RBP21.39■■□□□ 1.02
SDC2-201ENST00000302190 CC2D2AQ9P2K1 1620 aa21.34■■□□□ 1.01
SDC2-201ENST00000302190 SMARCA2P51531 1590 aa21.32■■□□□ 1
SDC2-201ENST00000302190 HNRNPUL2Q1KMD3 747 aaKnown RBP21.26■□□□□ 0.99
SDC2-201ENST00000302190 ABCC8Q09428 1581 aa21.25■□□□□ 0.99
SDC2-201ENST00000302190 CENPBP07199 599 aaPredicted RBP21.22■□□□□ 0.99
SDC2-201ENST00000302190 SCAF1Q9H7N4 1312 aaKnown RBP21.22■□□□□ 0.99
SDC2-201ENST00000302190 NCAPD3P42695 1498 aa21.16■□□□□ 0.98
SDC2-201ENST00000302190 PEG3Q9GZU2 1588 aa21.16■□□□□ 0.98
SDC2-201ENST00000302190 DIEXFQ68CQ4 756 aaKnown RBP21.08■□□□□ 0.96
SDC2-201ENST00000302190 ATP1B4Q9UN42 357 aaPredicted RBP21.02■□□□□ 0.96
SDC2-201ENST00000302190 ITGAEP38570 1179 aa21.02■□□□□ 0.96
SDC2-201ENST00000302190 NESP48681 1621 aa21.02■□□□□ 0.96
SDC2-201ENST00000302190 HMGXB3Q12766 1538 aa20.97■□□□□ 0.95
SDC2-201ENST00000302190 GTF3C3Q9Y5Q9 886 aa20.91■□□□□ 0.94
SDC2-201ENST00000302190 WRNQ14191 1432 aaPredicted RBP eCLIP20.88■□□□□ 0.93
SDC2-201ENST00000302190 SOGA1O94964 1423 aa20.86■□□□□ 0.93
SDC2-201ENST00000302190 RUSC2Q8N2Y8 1516 aa20.85■□□□□ 0.93
SDC2-201ENST00000302190 CADPSQ9ULU8 1353 aa20.83■□□□□ 0.93
SDC2-201ENST00000302190 SYNJ1O43426 1573 aa20.77■□□□□ 0.92
SDC2-201ENST00000302190 CFTRP13569 1480 aa20.76■□□□□ 0.91
SDC2-201ENST00000302190 NEUROD1Q13562 356 aa20.75■□□□□ 0.91
SDC2-201ENST00000302190 ACIN1Q9UKV3 1341 aaKnown RBP20.72■□□□□ 0.91
SDC2-201ENST00000302190 CSRNP3Q8WYN3 585 aa20.72■□□□□ 0.91
SDC2-201ENST00000302190 FANCD2Q9BXW9 1451 aa20.66■□□□□ 0.9
SDC2-201ENST00000302190 CUX1P39880 1505 aa20.61■□□□□ 0.89
SDC2-201ENST00000302190 ZNF316A6NFI3 1004 aaPredicted RBP20.61■□□□□ 0.89
SDC2-201ENST00000302190 RAD54L2Q9Y4B4 1467 aa20.52■□□□□ 0.88
SDC2-201ENST00000302190 CEP164Q9UPV0 1460 aa20.47■□□□□ 0.87
SDC2-201ENST00000302190 FGD5Q6ZNL6 1462 aa20.46■□□□□ 0.87
SDC2-201ENST00000302190 ERCC6Q03468 1493 aa20.45■□□□□ 0.86
SDC2-201ENST00000302190 PDS5BQ9NTI5 1447 aa20.44■□□□□ 0.86
SDC2-201ENST00000302190 TOP2BQ02880 1626 aa20.44■□□□□ 0.86
SDC2-201ENST00000302190 TDRD9Q8NDG6 1382 aaKnown RBP20.44■□□□□ 0.86
SDC2-201ENST00000302190 KIF21AQ7Z4S6 1674 aa20.43■□□□□ 0.86
SDC2-201ENST00000302190 CUX2O14529 1486 aa20.43■□□□□ 0.86
SDC2-201ENST00000302190 MIER1Q8N108 512 aa20.41■□□□□ 0.86
SDC2-201ENST00000302190 CNGB1Q14028 1251 aaPredicted RBP20.4■□□□□ 0.86
SDC2-201ENST00000302190 URB2Q14146 1524 aaKnown RBP20.4■□□□□ 0.86
SDC2-201ENST00000302190 BCANQ96GW7 911 aa20.4■□□□□ 0.86
SDC2-201ENST00000302190 LAMC3Q9Y6N6 1575 aa20.38■□□□□ 0.85
SDC2-201ENST00000302190 FAM50AQ14320 339 aaKnown RBP20.38■□□□□ 0.85
SDC2-201ENST00000302190 P3H3Q8IVL6 736 aa20.37■□□□□ 0.85
SDC2-201ENST00000302190 TOPBP1Q92547 1522 aa20.37■□□□□ 0.85
SDC2-201ENST00000302190 CEP162Q5TB80 1403 aa20.35■□□□□ 0.85
SDC2-201ENST00000302190 RAPGEF2Q9Y4G8 1499 aa20.33■□□□□ 0.85
SDC2-201ENST00000302190 POLA1P09884 1462 aaPredicted RBP20.32■□□□□ 0.84
SDC2-201ENST00000302190 BIVM-ERCC5R4GMW8 1640 aa20.3■□□□□ 0.84
SDC2-201ENST00000302190 PRDM2Q13029 1718 aa20.29■□□□□ 0.84
SDC2-201ENST00000302190 KIF27Q86VH2 1401 aa20.29■□□□□ 0.84
SDC2-201ENST00000302190 FBLN2P98095 1184 aa20.29■□□□□ 0.84
SDC2-201ENST00000302190 NEFLP07196 543 aa20.25■□□□□ 0.83
SDC2-201ENST00000302190 AQRO60306 1485 aaKnown RBP eCLIP20.24■□□□□ 0.832e-6■■■■□ 24.3
SDC2-201ENST00000302190 DNMBPQ6XZF7 1577 aa20.22■□□□□ 0.83
SDC2-201ENST00000302190 IGF1RP08069 1367 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms