Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRCH3Q96II8 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
LRCH3Q96II8 CCT8L1P-201ENST00000465400 1674 ntBASIC14.86□□□□□ -0.03
LRCH3Q96II8 METTL22-203ENST00000561758 1312 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
LRCH3Q96II8 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.86□□□□□ -0.03
LRCH3Q96II8 AC018529.2-202ENST00000611482 3087 ntBASIC14.86□□□□□ -0.03
LRCH3Q96II8 BX640514.1-201ENST00000583223 1918 ntBASIC14.86□□□□□ -0.03
LRCH3Q96II8 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRCH3Q96II8 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LRCH3Q96II8 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRCH3Q96II8 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
LRCH3Q96II8 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LRCH3Q96II8 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 SLC36A1-211ENST00000616007 1389 ntTSL 2 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 GLDC-216ENST00000639639 1559 ntTSL 3 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 CKS2-201ENST00000314355 613 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 OAZ3-201ENST00000321531 851 ntTSL 5 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 OR8B8-201ENST00000328064 1033 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 RNF7-202ENST00000393000 805 ntTSL 2 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 AL078595.1-201ENST00000404458 226 ntBASIC14.85□□□□□ -0.03
LRCH3Q96II8 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 AL049792.1-201ENST00000424708 1262 ntBASIC14.85□□□□□ -0.03
LRCH3Q96II8 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 SELENOK-205ENST00000541726 814 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 ZFYVE1-206ENST00000555072 1225 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 OSGIN1-206ENST00000565123 833 ntTSL 2 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 AC090953.1-201ENST00000604305 1092 ntBASIC14.85□□□□□ -0.03
LRCH3Q96II8 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC14.85□□□□□ -0.03
LRCH3Q96II8 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 AC027601.5-201ENST00000624065 2482 ntBASIC14.85□□□□□ -0.03
LRCH3Q96II8 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 AC106872.9-201ENST00000512437 1393 ntBASIC14.85□□□□□ -0.03
LRCH3Q96II8 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LRCH3Q96II8 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.85□□□□□ -0.03
LRCH3Q96II8 NME1-209ENST00000511355 1645 ntTSL 5 BASIC14.84□□□□□ -0.03
LRCH3Q96II8 AC015688.4-201ENST00000580780 1647 ntBASIC14.84□□□□□ -0.03
LRCH3Q96II8 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LRCH3Q96II8 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
LRCH3Q96II8 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LRCH3Q96II8 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.84□□□□□ -0.03
LRCH3Q96II8 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LRCH3Q96II8 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
LRCH3Q96II8 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LRCH3Q96II8 PSMA7-202ENST00000370861 773 ntTSL 5 BASIC14.84□□□□□ -0.03
LRCH3Q96II8 AL391903.1-201ENST00000407513 365 ntBASIC14.84□□□□□ -0.03
LRCH3Q96II8 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC14.84□□□□□ -0.03
LRCH3Q96II8 Z84721.1-201ENST00000438841 372 ntBASIC14.84□□□□□ -0.03
LRCH3Q96II8 AC006001.2-202ENST00000439360 508 ntTSL 3 BASIC14.84□□□□□ -0.03
LRCH3Q96II8 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LRCH3Q96II8 RN7SL477P-201ENST00000488440 286 ntBASIC14.84□□□□□ -0.03
LRCH3Q96II8 RN7SL2-201ENST00000490232 300 ntBASIC14.84□□□□□ -0.03
LRCH3Q96II8 PDPN-208ENST00000509009 571 ntTSL 4 BASIC14.84□□□□□ -0.03
LRCH3Q96II8 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC14.84□□□□□ -0.03
LRCH3Q96II8 AC253576.1-201ENST00000511645 1156 ntBASIC14.84□□□□□ -0.03
LRCH3Q96II8 AC027279.2-201ENST00000561938 793 ntTSL 5 BASIC14.84□□□□□ -0.03
LRCH3Q96II8 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LRCH3Q96II8 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC14.84□□□□□ -0.03
LRCH3Q96II8 RN7SL4P-201ENST00000584058 295 ntBASIC14.84□□□□□ -0.03
LRCH3Q96II8 AC022079.1-201ENST00000621546 602 ntBASIC14.84□□□□□ -0.03
LRCH3Q96II8 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.84□□□□□ -0.03
LRCH3Q96II8 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LRCH3Q96II8 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LRCH3Q96II8 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.84□□□□□ -0.03
LRCH3Q96II8 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
LRCH3Q96II8 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms