Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
PTCHD3Q3KNS1 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.82■■□□□ 1.08
PTCHD3Q3KNS1 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTCHD3Q3KNS1 AC133561.1-201ENST00000568600 2415 ntBASIC21.81■■□□□ 1.08
PTCHD3Q3KNS1 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.81■■□□□ 1.08
PTCHD3Q3KNS1 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTCHD3Q3KNS1 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
PTCHD3Q3KNS1 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PTCHD3Q3KNS1 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PTCHD3Q3KNS1 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PTCHD3Q3KNS1 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.81■■□□□ 1.08
PTCHD3Q3KNS1 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.81■■□□□ 1.08
PTCHD3Q3KNS1 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.81■■□□□ 1.08
PTCHD3Q3KNS1 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
PTCHD3Q3KNS1 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.81■■□□□ 1.08
PTCHD3Q3KNS1 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.8■■□□□ 1.08
PTCHD3Q3KNS1 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.8■■□□□ 1.08
PTCHD3Q3KNS1 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PTCHD3Q3KNS1 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.8■■□□□ 1.08
PTCHD3Q3KNS1 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.8■■□□□ 1.08
PTCHD3Q3KNS1 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTCHD3Q3KNS1 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
PTCHD3Q3KNS1 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.8■■□□□ 1.08
PTCHD3Q3KNS1 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTCHD3Q3KNS1 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTCHD3Q3KNS1 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
PTCHD3Q3KNS1 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTCHD3Q3KNS1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTCHD3Q3KNS1 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.79■■□□□ 1.08
PTCHD3Q3KNS1 AL139246.5-201ENST00000606645 996 ntBASIC21.79■■□□□ 1.08
PTCHD3Q3KNS1 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PTCHD3Q3KNS1 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTCHD3Q3KNS1 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.79■■□□□ 1.08
PTCHD3Q3KNS1 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.79■■□□□ 1.08
PTCHD3Q3KNS1 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTCHD3Q3KNS1 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.79■■□□□ 1.08
PTCHD3Q3KNS1 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTCHD3Q3KNS1 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.78■■□□□ 1.08
PTCHD3Q3KNS1 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PTCHD3Q3KNS1 AC096631.2-201ENST00000436136 790 ntBASIC21.78■■□□□ 1.08
PTCHD3Q3KNS1 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.78■■□□□ 1.08
PTCHD3Q3KNS1 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.78■■□□□ 1.08
PTCHD3Q3KNS1 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PTCHD3Q3KNS1 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PTCHD3Q3KNS1 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PTCHD3Q3KNS1 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
PTCHD3Q3KNS1 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.77■■□□□ 1.08
PTCHD3Q3KNS1 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.77■■□□□ 1.08
PTCHD3Q3KNS1 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.77■■□□□ 1.08
PTCHD3Q3KNS1 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
PTCHD3Q3KNS1 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
PTCHD3Q3KNS1 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
PTCHD3Q3KNS1 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 AL353803.4-201ENST00000565882 1934 ntBASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 MIR638-201ENST00000385237 100 ntBASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 AC110285.6-201ENST00000617652 491 ntBASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 AC144652.1-201ENST00000609974 1624 ntBASIC21.76■■□□□ 1.07
PTCHD3Q3KNS1 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.75■■□□□ 1.07
PTCHD3Q3KNS1 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTCHD3Q3KNS1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTCHD3Q3KNS1 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTCHD3Q3KNS1 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTCHD3Q3KNS1 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PTCHD3Q3KNS1 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PTCHD3Q3KNS1 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.75■■□□□ 1.07
PTCHD3Q3KNS1 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.75■■□□□ 1.07
PTCHD3Q3KNS1 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.75■■□□□ 1.07
PTCHD3Q3KNS1 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTCHD3Q3KNS1 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PTCHD3Q3KNS1 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
PTCHD3Q3KNS1 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PTCHD3Q3KNS1 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
PTCHD3Q3KNS1 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.74■■□□□ 1.07
PTCHD3Q3KNS1 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PTCHD3Q3KNS1 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
PTCHD3Q3KNS1 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PTCHD3Q3KNS1 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms