Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC12.53□□□□□ -0.4
SUMO3P55854 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SUMO3P55854 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
SUMO3P55854 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
SUMO3P55854 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
SUMO3P55854 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
SUMO3P55854 AC117503.4-201ENST00000623229 1418 ntBASIC12.53□□□□□ -0.4
SUMO3P55854 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC12.53□□□□□ -0.4
SUMO3P55854 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SUMO3P55854 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SUMO3P55854 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SUMO3P55854 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
SUMO3P55854 MKRN5P-201ENST00000445263 1467 ntBASIC12.53□□□□□ -0.4
SUMO3P55854 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SUMO3P55854 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SUMO3P55854 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SUMO3P55854 AC105206.1-202ENST00000314927 2368 ntBASIC12.52□□□□□ -0.4
SUMO3P55854 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
SUMO3P55854 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
SUMO3P55854 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC12.52□□□□□ -0.4
SUMO3P55854 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SUMO3P55854 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SUMO3P55854 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC12.52□□□□□ -0.4
SUMO3P55854 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
SUMO3P55854 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SUMO3P55854 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC12.52□□□□□ -0.4
SUMO3P55854 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SUMO3P55854 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SUMO3P55854 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
SUMO3P55854 DDX19B-202ENST00000355992 1692 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
SUMO3P55854 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
SUMO3P55854 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
SUMO3P55854 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
SUMO3P55854 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SUMO3P55854 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC12.52□□□□□ -0.4
SUMO3P55854 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC12.52□□□□□ -0.41
SUMO3P55854 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
SUMO3P55854 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
SUMO3P55854 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 ABCD1P4-201ENST00000399687 604 ntBASIC12.52□□□□□ -0.41
SUMO3P55854 RN7SKP109-201ENST00000410592 316 ntBASIC12.52□□□□□ -0.41
SUMO3P55854 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC12.52□□□□□ -0.41
SUMO3P55854 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC12.52□□□□□ -0.41
SUMO3P55854 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC12.52□□□□□ -0.41
SUMO3P55854 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
SUMO3P55854 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC12.52□□□□□ -0.41
SUMO3P55854 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC12.52□□□□□ -0.41
SUMO3P55854 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC12.52□□□□□ -0.41
SUMO3P55854 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
SUMO3P55854 FOS-204ENST00000554617 796 ntTSL 2 BASIC12.52□□□□□ -0.41
SUMO3P55854 PRKXP1-201ENST00000561423 1122 ntBASIC12.52□□□□□ -0.41
SUMO3P55854 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC12.52□□□□□ -0.41
SUMO3P55854 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC12.52□□□□□ -0.41
SUMO3P55854 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC12.52□□□□□ -0.41
SUMO3P55854 NUDT4P2-201ENST00000578341 546 ntBASIC12.52□□□□□ -0.41
SUMO3P55854 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC12.52□□□□□ -0.41
SUMO3P55854 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
SUMO3P55854 AC140113.1-201ENST00000603467 169 ntBASIC12.52□□□□□ -0.41
SUMO3P55854 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC12.52□□□□□ -0.41
SUMO3P55854 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC12.52□□□□□ -0.41
SUMO3P55854 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC12.52□□□□□ -0.41
SUMO3P55854 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC12.52□□□□□ -0.41
SUMO3P55854 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
SUMO3P55854 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SUMO3P55854 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SUMO3P55854 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC12.51□□□□□ -0.41
SUMO3P55854 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
SUMO3P55854 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SUMO3P55854 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC12.51□□□□□ -0.41
SUMO3P55854 NME1-209ENST00000511355 1645 ntTSL 5 BASIC12.51□□□□□ -0.41
SUMO3P55854 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SUMO3P55854 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC12.51□□□□□ -0.41
SUMO3P55854 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SUMO3P55854 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SUMO3P55854 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC12.51□□□□□ -0.41
SUMO3P55854 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SUMO3P55854 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
SUMO3P55854 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SUMO3P55854 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
SUMO3P55854 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SUMO3P55854 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
SUMO3P55854 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
SUMO3P55854 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SUMO3P55854 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
SUMO3P55854 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms