RNA–Protein interactions for RNA: ENST00000613758.4

TMEM254-213, Transcript of transmembrane protein 254, humanhuman

TSL 1 (best) BASIC

Gene TMEM254, Length 2,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM254-213ENST00000613758 NISCHQ9Y2I1 1504 aa31.91■■■□□ 2.7
TMEM254-213ENST00000613758 CCDC180Q9P1Z9 1646 aa27.96■■■□□ 2.07
TMEM254-213ENST00000613758 ABCC9O60706 1549 aa26.8■■□□□ 1.88
TMEM254-213ENST00000613758 ZCCHC6Q5VYS8 1495 aaKnown RBP26.71■■□□□ 1.87
TMEM254-213ENST00000613758 DCAF8L2P0C7V8 631 aa26.53■■□□□ 1.84
TMEM254-213ENST00000613758 DCAF1Q9Y4B6 1507 aa26.39■■□□□ 1.81
TMEM254-213ENST00000613758 MYO15BQ96JP2 1530 aa26.22■■□□□ 1.79
TMEM254-213ENST00000613758 NACADO15069 1562 aa26.17■■□□□ 1.78
TMEM254-213ENST00000613758 RB1CC1Q8TDY2 1594 aa26.02■■□□□ 1.76
TMEM254-213ENST00000613758 SHROOM4Q9ULL8 1493 aa25.77■■□□□ 1.72
TMEM254-213ENST00000613758 SCRIBQ14160 1630 aa25.67■■□□□ 1.7
TMEM254-213ENST00000613758 UNC13AQ9UPW8 1703 aa25.43■■□□□ 1.66
TMEM254-213ENST00000613758 PABPN1Q86U42 306 aaKnown RBP eCLIP25.24■■□□□ 1.63
TMEM254-213ENST00000613758 BICRAQ9NZM4 1560 aa25.23■■□□□ 1.63
TMEM254-213ENST00000613758 CECR2Q9BXF3 1484 aa24.82■■□□□ 1.56
TMEM254-213ENST00000613758 BAZ1AQ9NRL2 1556 aaPredicted RBP24.67■■□□□ 1.54
TMEM254-213ENST00000613758 SUPT5HO00267 1087 aaKnown RBP24.65■■□□□ 1.54
TMEM254-213ENST00000613758 MROH2BQ7Z745 1585 aa24.63■■□□□ 1.53
TMEM254-213ENST00000613758 RSF1Q96T23 1441 aaPredicted RBP24.63■■□□□ 1.53
TMEM254-213ENST00000613758 SMARCA4P51532 1647 aa24.59■■□□□ 1.53
TMEM254-213ENST00000613758 EIF4G1Q04637 1599 aaKnown RBP24.5■■□□□ 1.51
TMEM254-213ENST00000613758 WIZO95785 1651 aa24.39■■□□□ 1.5
TMEM254-213ENST00000613758 PEG3Q9GZU2 1588 aa24.31■■□□□ 1.48
TMEM254-213ENST00000613758 ATAD2BQ9ULI0 1458 aa24.3■■□□□ 1.48
TMEM254-213ENST00000613758 SMARCA2P51531 1590 aa24.27■■□□□ 1.48
TMEM254-213ENST00000613758 CC2D2AQ9P2K1 1620 aa24.23■■□□□ 1.47
TMEM254-213ENST00000613758 NCAPD3P42695 1498 aa24.17■■□□□ 1.46
TMEM254-213ENST00000613758 TOP2AP11388 1531 aaKnown RBP24.15■■□□□ 1.46
TMEM254-213ENST00000613758 BAZ1BQ9UIG0 1483 aaKnown RBP24.14■■□□□ 1.45
TMEM254-213ENST00000613758 HMGXB3Q12766 1538 aa24.07■■□□□ 1.44
TMEM254-213ENST00000613758 DNAJC5BQ9UF47 199 aa24.01■■□□□ 1.43
TMEM254-213ENST00000613758 CCDC88BA6NC98 1476 aa23.91■■□□□ 1.42
TMEM254-213ENST00000613758 CADPSQ9ULU8 1353 aa23.53■■□□□ 1.36
TMEM254-213ENST00000613758 CFTRP13569 1480 aa23.52■■□□□ 1.36
TMEM254-213ENST00000613758 NESP48681 1621 aa23.41■■□□□ 1.34
TMEM254-213ENST00000613758 CHIC1Q5VXU3 224 aa23.4■■□□□ 1.34
TMEM254-213ENST00000613758 LAMC3Q9Y6N6 1575 aa23.38■■□□□ 1.33
TMEM254-213ENST00000613758 PRDM2Q13029 1718 aa23.31■■□□□ 1.32
TMEM254-213ENST00000613758 ABCC8Q09428 1581 aa23.26■■□□□ 1.31
TMEM254-213ENST00000613758 FANCD2Q9BXW9 1451 aa23.25■■□□□ 1.31
TMEM254-213ENST00000613758 PDS5BQ9NTI5 1447 aa23.25■■□□□ 1.31
TMEM254-213ENST00000613758 TRIM41Q8WV44 630 aa23.21■■□□□ 1.31
TMEM254-213ENST00000613758 WRNQ14191 1432 aaPredicted RBP eCLIP23.19■■□□□ 1.3
TMEM254-213ENST00000613758 CEP164Q9UPV0 1460 aa23.14■■□□□ 1.29
TMEM254-213ENST00000613758 KIF21AQ7Z4S6 1674 aa23.09■■□□□ 1.29
TMEM254-213ENST00000613758 SYNJ1O43426 1573 aa23.07■■□□□ 1.28
TMEM254-213ENST00000613758 CUX1P39880 1505 aa23.05■■□□□ 1.28
TMEM254-213ENST00000613758 ERCC6Q03468 1493 aa23.03■■□□□ 1.28
TMEM254-213ENST00000613758 TOP2BQ02880 1626 aa23.02■■□□□ 1.28
TMEM254-213ENST00000613758 BIVM-ERCC5R4GMW8 1640 aa22.99■■□□□ 1.27
TMEM254-213ENST00000613758 URB2Q14146 1524 aaKnown RBP22.98■■□□□ 1.27
TMEM254-213ENST00000613758 DNMBPQ6XZF7 1577 aa22.96■■□□□ 1.27
TMEM254-213ENST00000613758 TOPBP1Q92547 1522 aa22.95■■□□□ 1.26
TMEM254-213ENST00000613758 MRC2Q9UBG0 1479 aa22.95■■□□□ 1.26
TMEM254-213ENST00000613758 FGD5Q6ZNL6 1462 aa22.86■■□□□ 1.25
TMEM254-213ENST00000613758 WDR62O43379 1518 aa22.82■■□□□ 1.24
TMEM254-213ENST00000613758 THOC2Q8NI27 1593 aaKnown RBP22.82■■□□□ 1.24
TMEM254-213ENST00000613758 POLA1P09884 1462 aaPredicted RBP22.81■■□□□ 1.24
TMEM254-213ENST00000613758 SOGA1O94964 1423 aa22.77■■□□□ 1.24
TMEM254-213ENST00000613758 FAM9AQ8IZU1 332 aaPredicted RBP22.77■■□□□ 1.24
TMEM254-213ENST00000613758 RAD54L2Q9Y4B4 1467 aa22.74■■□□□ 1.23
TMEM254-213ENST00000613758 RUSC2Q8N2Y8 1516 aa22.71■■□□□ 1.23
TMEM254-213ENST00000613758 CUX2O14529 1486 aa22.68■■□□□ 1.22
TMEM254-213ENST00000613758 EEA1Q15075 1411 aa22.67■■□□□ 1.22
TMEM254-213ENST00000613758 ABCA10Q8WWZ4 1543 aa22.66■■□□□ 1.22
TMEM254-213ENST00000613758 KIF27Q86VH2 1401 aa22.65■■□□□ 1.22
TMEM254-213ENST00000613758 TARBP1Q13395 1621 aaKnown RBP22.62■■□□□ 1.21
TMEM254-213ENST00000613758 IFT140Q96RY7 1462 aa22.62■■□□□ 1.21
TMEM254-213ENST00000613758 CSRNP3Q8WYN3 585 aa22.62■■□□□ 1.21
TMEM254-213ENST00000613758 TDRD9Q8NDG6 1382 aaKnown RBP22.57■■□□□ 1.2
TMEM254-213ENST00000613758 WDR97A6NE52 1622 aa22.57■■□□□ 1.2
TMEM254-213ENST00000613758 LOC105371045A0A1W2PR82 267 aa22.5■■□□□ 1.19
TMEM254-213ENST00000613758 IGF1RP08069 1367 aa22.5■■□□□ 1.19
TMEM254-213ENST00000613758 ZNF608Q9ULD9 1512 aaPredicted RBP22.49■■□□□ 1.19
TMEM254-213ENST00000613758 GAPVD1Q14C86 1478 aa22.49■■□□□ 1.19
TMEM254-213ENST00000613758 AQRO60306 1485 aaKnown RBP eCLIP22.48■■□□□ 1.19
TMEM254-213ENST00000613758 ABCA5Q8WWZ7 1642 aa22.48■■□□□ 1.19
TMEM254-213ENST00000613758 EHMT2Q96KQ7 1210 aa22.45■■□□□ 1.18
TMEM254-213ENST00000613758 ERICH3Q5RHP9 1530 aa22.39■■□□□ 1.17
TMEM254-213ENST00000613758 PRXQ9BXM0 1461 aa22.39■■□□□ 1.17
TMEM254-213ENST00000613758 EIF4G3O43432 1585 aaKnown RBP22.38■■□□□ 1.17
TMEM254-213ENST00000613758 CARMIL1Q5VZK9 1371 aa22.38■■□□□ 1.17
TMEM254-213ENST00000613758 GRIN2BQ13224 1484 aa22.38■■□□□ 1.17
TMEM254-213ENST00000613758 KIF21BO75037 1637 aa22.36■■□□□ 1.17
TMEM254-213ENST00000613758 PBRM1Q86U86 1689 aa22.34■■□□□ 1.17
TMEM254-213ENST00000613758 GOLGA3Q08378 1498 aa22.33■■□□□ 1.16
TMEM254-213ENST00000613758 RAPGEF2Q9Y4G8 1499 aa22.32■■□□□ 1.16
TMEM254-213ENST00000613758 CUL7Q14999 1698 aa22.3■■□□□ 1.16
TMEM254-213ENST00000613758 UBTFP17480 764 aaKnown RBP22.29■■□□□ 1.16
TMEM254-213ENST00000613758 SNAPC4Q5SXM2 1469 aa22.25■■□□□ 1.15
TMEM254-213ENST00000613758 FHAD1B1AJZ9 1412 aa22.25■■□□□ 1.15
TMEM254-213ENST00000613758 MAGI1Q96QZ7 1491 aaPredicted RBP22.21■■□□□ 1.15
TMEM254-213ENST00000613758 ADAMTS12P58397 1594 aa22.21■■□□□ 1.15
TMEM254-213ENST00000613758 TNIKQ9UKE5 1360 aa22.21■■□□□ 1.15
TMEM254-213ENST00000613758 CHMP7Q8WUX9 453 aaPredicted RBP22.15■■□□□ 1.14
TMEM254-213ENST00000613758 SYNJ2O15056 1496 aa22.13■■□□□ 1.13
TMEM254-213ENST00000613758 FBLN2P98095 1184 aa22.12■■□□□ 1.13
TMEM254-213ENST00000613758 GRIN2AQ12879 1464 aa22.08■■□□□ 1.13
TMEM254-213ENST00000613758 CEP162Q5TB80 1403 aa22.04■■□□□ 1.12
TMEM254-213ENST00000613758 RANGAP1P46060 587 aaPredicted RBP22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms