Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC16.1■□□□□ 0.17
ERCC3P19447 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.1■□□□□ 0.17
ERCC3P19447 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
ERCC3P19447 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC16.1■□□□□ 0.17
ERCC3P19447 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.1■□□□□ 0.17
ERCC3P19447 PHB-210ENST00000511832 1509 ntTSL 2 BASIC16.09■□□□□ 0.17
ERCC3P19447 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
ERCC3P19447 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
ERCC3P19447 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.09■□□□□ 0.17
ERCC3P19447 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
ERCC3P19447 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 COX20P1-201ENST00000366529 357 ntBASIC16.09■□□□□ 0.17
ERCC3P19447 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC16.09■□□□□ 0.17
ERCC3P19447 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
ERCC3P19447 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC16.09■□□□□ 0.17
ERCC3P19447 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 KRT18P37-201ENST00000520711 1282 ntBASIC16.09■□□□□ 0.17
ERCC3P19447 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC16.09■□□□□ 0.17
ERCC3P19447 BATF-202ENST00000555504 361 ntTSL 2 BASIC16.09■□□□□ 0.17
ERCC3P19447 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC16.09■□□□□ 0.17
ERCC3P19447 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC16.09■□□□□ 0.17
ERCC3P19447 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 AC132825.4-202ENST00000578792 434 ntBASIC16.09■□□□□ 0.17
ERCC3P19447 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 PEBP1P2-201ENST00000603980 558 ntBASIC16.09■□□□□ 0.17
ERCC3P19447 COQ4-204ENST00000608951 781 ntTSL 2 BASIC16.09■□□□□ 0.17
ERCC3P19447 AC012183.1-201ENST00000625197 499 ntBASIC16.09■□□□□ 0.17
ERCC3P19447 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
ERCC3P19447 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC16.09■□□□□ 0.17
ERCC3P19447 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
ERCC3P19447 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
ERCC3P19447 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
ERCC3P19447 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC16.09■□□□□ 0.17
ERCC3P19447 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
ERCC3P19447 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ERCC3P19447 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
ERCC3P19447 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ERCC3P19447 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC16.08■□□□□ 0.17
ERCC3P19447 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
ERCC3P19447 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
ERCC3P19447 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ERCC3P19447 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC16.08■□□□□ 0.17
ERCC3P19447 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC16.08■□□□□ 0.17
ERCC3P19447 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC16.08■□□□□ 0.17
ERCC3P19447 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC16.08■□□□□ 0.17
ERCC3P19447 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
ERCC3P19447 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC16.08■□□□□ 0.16
ERCC3P19447 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC16.08■□□□□ 0.16
ERCC3P19447 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 SURF4-203ENST00000371991 715 ntTSL 3 BASIC16.08■□□□□ 0.16
ERCC3P19447 AP000354.1-201ENST00000396982 456 ntBASIC16.08■□□□□ 0.16
ERCC3P19447 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC16.08■□□□□ 0.16
ERCC3P19447 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC16.08■□□□□ 0.16
ERCC3P19447 HMGA1P1-201ENST00000415560 1062 ntBASIC16.08■□□□□ 0.16
ERCC3P19447 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC16.08■□□□□ 0.16
ERCC3P19447 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC16.08■□□□□ 0.16
ERCC3P19447 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC16.08■□□□□ 0.16
ERCC3P19447 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC16.08■□□□□ 0.16
ERCC3P19447 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
ERCC3P19447 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC16.08■□□□□ 0.16
ERCC3P19447 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC16.08■□□□□ 0.16
ERCC3P19447 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC16.08■□□□□ 0.16
ERCC3P19447 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.08■□□□□ 0.16
ERCC3P19447 AL118516.1-201ENST00000564152 670 ntBASIC16.08■□□□□ 0.16
ERCC3P19447 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC16.08■□□□□ 0.16
ERCC3P19447 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC16.08■□□□□ 0.16
ERCC3P19447 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
ERCC3P19447 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 USP39-220ENST00000613444 2161 ntTSL 2 BASIC16.08■□□□□ 0.16
ERCC3P19447 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
ERCC3P19447 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC16.08■□□□□ 0.16
ERCC3P19447 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms