Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SNED1Q8TER0 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SNED1Q8TER0 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SNED1Q8TER0 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SNED1Q8TER0 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SNED1Q8TER0 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SNED1Q8TER0 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SNED1Q8TER0 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SNED1Q8TER0 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SNED1Q8TER0 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SNED1Q8TER0 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 AK2P2-201ENST00000439142 405 ntBASIC16.48■□□□□ 0.23
SNED1Q8TER0 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 RN7SL47P-201ENST00000488710 299 ntBASIC16.48■□□□□ 0.23
SNED1Q8TER0 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 GOLGA8IP-202ENST00000611635 2100 ntBASIC16.48■□□□□ 0.23
SNED1Q8TER0 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SNED1Q8TER0 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 ZNF33A-205ENST00000469037 1530 ntTSL 5 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SNED1Q8TER0 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SNED1Q8TER0 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SNED1Q8TER0 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SNED1Q8TER0 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SNED1Q8TER0 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SNED1Q8TER0 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 ZFHX4-AS1-201ENST00000518143 1711 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 GBAP1-208ENST00000566701 1546 ntBASIC16.47■□□□□ 0.23
SNED1Q8TER0 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 MARCKSL1P2-201ENST00000401037 976 ntBASIC16.47■□□□□ 0.23
SNED1Q8TER0 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 ASLP1-201ENST00000428790 637 ntBASIC16.47■□□□□ 0.23
SNED1Q8TER0 AC093106.1-201ENST00000437271 352 ntBASIC16.47■□□□□ 0.23
SNED1Q8TER0 CHN2-214ENST00000439711 755 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 AC009041.1-202ENST00000599946 987 ntTSL 5 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 AC136475.7-201ENST00000602949 592 ntBASIC16.47■□□□□ 0.23
SNED1Q8TER0 AC254633.1-201ENST00000606790 345 ntBASIC16.47■□□□□ 0.23
SNED1Q8TER0 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 AC008038.1-201ENST00000634247 1314 ntBASIC16.47■□□□□ 0.23
SNED1Q8TER0 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 LTA-213ENST00000418386 1422 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNED1Q8TER0 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC16.47■□□□□ 0.23
SNED1Q8TER0 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SNED1Q8TER0 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SNED1Q8TER0 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC16.46■□□□□ 0.23
SNED1Q8TER0 AL031577.1-201ENST00000339867 399 ntBASIC16.46■□□□□ 0.23
SNED1Q8TER0 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC16.46■□□□□ 0.23
SNED1Q8TER0 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC16.46■□□□□ 0.23
SNED1Q8TER0 BICD1P1-201ENST00000457832 1222 ntBASIC16.46■□□□□ 0.23
SNED1Q8TER0 AC008021.1-201ENST00000474180 414 ntBASIC16.46■□□□□ 0.23
SNED1Q8TER0 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms