Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC12.84□□□□□ -0.35
NKX2-2O95096 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC12.84□□□□□ -0.35
NKX2-2O95096 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC12.84□□□□□ -0.35
NKX2-2O95096 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 AC245884.6-201ENST00000515672 1067 ntBASIC12.84□□□□□ -0.35
NKX2-2O95096 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC12.84□□□□□ -0.35
NKX2-2O95096 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC12.84□□□□□ -0.35
NKX2-2O95096 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC12.84□□□□□ -0.35
NKX2-2O95096 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
NKX2-2O95096 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC12.84□□□□□ -0.35
NKX2-2O95096 AC097724.1-201ENST00000609581 426 ntBASIC12.84□□□□□ -0.35
NKX2-2O95096 CMC2-224ENST00000630396 481 ntTSL 5 BASIC12.84□□□□□ -0.35
NKX2-2O95096 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
NKX2-2O95096 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
NKX2-2O95096 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 AC073862.5-201ENST00000624129 2027 ntBASIC12.84□□□□□ -0.35
NKX2-2O95096 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
NKX2-2O95096 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-2O95096 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC12.84□□□□□ -0.35
NKX2-2O95096 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
NKX2-2O95096 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
NKX2-2O95096 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
NKX2-2O95096 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
NKX2-2O95096 AL031595.1-201ENST00000623969 4709 ntBASIC12.83□□□□□ -0.35
NKX2-2O95096 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-2O95096 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC12.83□□□□□ -0.36
NKX2-2O95096 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
NKX2-2O95096 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
NKX2-2O95096 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
NKX2-2O95096 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
NKX2-2O95096 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC12.83□□□□□ -0.36
NKX2-2O95096 AL627231.1-201ENST00000394467 1125 ntBASIC12.83□□□□□ -0.36
NKX2-2O95096 GGTLC4P-201ENST00000402176 664 ntBASIC12.83□□□□□ -0.36
NKX2-2O95096 RPL3P2-204ENST00000413027 1203 ntBASIC12.83□□□□□ -0.36
NKX2-2O95096 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC12.83□□□□□ -0.36
NKX2-2O95096 AL512306.1-201ENST00000432698 848 ntBASIC12.83□□□□□ -0.36
NKX2-2O95096 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC12.83□□□□□ -0.36
NKX2-2O95096 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC12.83□□□□□ -0.36
NKX2-2O95096 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC12.83□□□□□ -0.36
NKX2-2O95096 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-2O95096 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-2O95096 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC12.83□□□□□ -0.36
NKX2-2O95096 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC12.83□□□□□ -0.36
NKX2-2O95096 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC12.83□□□□□ -0.36
NKX2-2O95096 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-2O95096 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 AC007718.1-201ENST00000621078 280 ntBASIC12.83□□□□□ -0.36
NKX2-2O95096 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC12.83□□□□□ -0.36
NKX2-2O95096 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC12.83□□□□□ -0.36
NKX2-2O95096 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
NKX2-2O95096 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC12.83□□□□□ -0.36
NKX2-2O95096 AC005252.3-201ENST00000623855 2258 ntBASIC12.83□□□□□ -0.36
NKX2-2O95096 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-2O95096 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 AC114271.1-201ENST00000612689 2813 ntBASIC12.83□□□□□ -0.36
NKX2-2O95096 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
NKX2-2O95096 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-2O95096 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-2O95096 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
NKX2-2O95096 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-2O95096 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC12.82□□□□□ -0.36
NKX2-2O95096 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
NKX2-2O95096 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC12.82□□□□□ -0.36
NKX2-2O95096 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
NKX2-2O95096 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC12.82□□□□□ -0.36
NKX2-2O95096 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC12.82□□□□□ -0.36
NKX2-2O95096 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC12.82□□□□□ -0.36
NKX2-2O95096 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
NKX2-2O95096 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms