RNA–Protein interactions for RNA: ENST00000535191.5

NEK4-207, Transcript of NIMA related kinase 4, humanhuman

TSL 2 BASIC

Gene NEK4, Length 2,452 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-207ENST00000535191 NISCHQ9Y2I1 1504 aa29.4■■■□□ 2.3
NEK4-207ENST00000535191 CCDC180Q9P1Z9 1646 aa25.26■■□□□ 1.63
NEK4-207ENST00000535191 ZCCHC6Q5VYS8 1495 aaKnown RBP24.79■■□□□ 1.56
NEK4-207ENST00000535191 SHROOM4Q9ULL8 1493 aa24.77■■□□□ 1.56
NEK4-207ENST00000535191 DCAF8L2P0C7V8 631 aa24.45■■□□□ 1.5
NEK4-207ENST00000535191 SUPT5HO00267 1087 aaKnown RBP24.23■■□□□ 1.47
NEK4-207ENST00000535191 DCAF1Q9Y4B6 1507 aa24.23■■□□□ 1.47
NEK4-207ENST00000535191 MYO15BQ96JP2 1530 aa23.71■■□□□ 1.39
NEK4-207ENST00000535191 ABCC9O60706 1549 aa23.49■■□□□ 1.35
NEK4-207ENST00000535191 CHIC1Q5VXU3 224 aa23.48■■□□□ 1.35
NEK4-207ENST00000535191 NACADO15069 1562 aa23.43■■□□□ 1.34
NEK4-207ENST00000535191 SCRIBQ14160 1630 aa23.42■■□□□ 1.34
NEK4-207ENST00000535191 RSF1Q96T23 1441 aaPredicted RBP23.17■■□□□ 1.3
NEK4-207ENST00000535191 RB1CC1Q8TDY2 1594 aa23.1■■□□□ 1.29
NEK4-207ENST00000535191 CECR2Q9BXF3 1484 aa22.91■■□□□ 1.26
NEK4-207ENST00000535191 MROH2BQ7Z745 1585 aa22.8■■□□□ 1.24
NEK4-207ENST00000535191 LOC105371045A0A1W2PR82 267 aa22.73■■□□□ 1.23
NEK4-207ENST00000535191 TRIM41Q8WV44 630 aa22.65■■□□□ 1.22
NEK4-207ENST00000535191 UNC13AQ9UPW8 1703 aa22.64■■□□□ 1.21
NEK4-207ENST00000535191 BAZ1AQ9NRL2 1556 aaPredicted RBP22.63■■□□□ 1.21
NEK4-207ENST00000535191 WIZO95785 1651 aa22.61■■□□□ 1.21
NEK4-207ENST00000535191 SMARCA4P51532 1647 aa22.45■■□□□ 1.18
NEK4-207ENST00000535191 PABPN1Q86U42 306 aaKnown RBP eCLIP22.41■■□□□ 1.18
NEK4-207ENST00000535191 PCGF6Q9BYE7 350 aa22.41■■□□□ 1.18
NEK4-207ENST00000535191 BICRAQ9NZM4 1560 aa22.38■■□□□ 1.17
NEK4-207ENST00000535191 FAM9AQ8IZU1 332 aaPredicted RBP22.38■■□□□ 1.17
NEK4-207ENST00000535191 TOP2AP11388 1531 aaKnown RBP22.34■■□□□ 1.17
NEK4-207ENST00000535191 HRCP23327 699 aa22.25■■□□□ 1.15
NEK4-207ENST00000535191 CCDC88BA6NC98 1476 aa22.24■■□□□ 1.15
NEK4-207ENST00000535191 EIF4G1Q04637 1599 aaKnown RBP22.18■■□□□ 1.14
NEK4-207ENST00000535191 SMARCA2P51531 1590 aa22.17■■□□□ 1.14
NEK4-207ENST00000535191 TRIM26Q12899 539 aaPredicted RBP22.13■■□□□ 1.13
NEK4-207ENST00000535191 EHMT2Q96KQ7 1210 aa22.13■■□□□ 1.13
NEK4-207ENST00000535191 PEG3Q9GZU2 1588 aa22.1■■□□□ 1.13
NEK4-207ENST00000535191 ABCC8Q09428 1581 aa22■■□□□ 1.11
NEK4-207ENST00000535191 ATAD2BQ9ULI0 1458 aa21.95■■□□□ 1.1
NEK4-207ENST00000535191 BAZ1BQ9UIG0 1483 aaKnown RBP21.88■■□□□ 1.09
NEK4-207ENST00000535191 SOGA1O94964 1423 aa21.81■■□□□ 1.08
NEK4-207ENST00000535191 WRNQ14191 1432 aaPredicted RBP eCLIP21.76■■□□□ 1.07
NEK4-207ENST00000535191 PPARGC1BQ86YN6 1023 aaKnown RBP21.75■■□□□ 1.07
NEK4-207ENST00000535191 CSRNP3Q8WYN3 585 aa21.75■■□□□ 1.07
NEK4-207ENST00000535191 EEA1Q15075 1411 aa21.74■■□□□ 1.07
NEK4-207ENST00000535191 RUSC2Q8N2Y8 1516 aa21.69■■□□□ 1.06
NEK4-207ENST00000535191 NCAPD3P42695 1498 aa21.64■■□□□ 1.06
NEK4-207ENST00000535191 TNIKQ9UKE5 1360 aa21.64■■□□□ 1.05
NEK4-207ENST00000535191 HMGXB3Q12766 1538 aa21.63■■□□□ 1.05
NEK4-207ENST00000535191 UBTFP17480 764 aaKnown RBP21.61■■□□□ 1.05
NEK4-207ENST00000535191 SYNJ1O43426 1573 aa21.59■■□□□ 1.05
NEK4-207ENST00000535191 CEP162Q5TB80 1403 aa21.59■■□□□ 1.05
NEK4-207ENST00000535191 ZEB1P37275 1124 aaPredicted RBP21.56■■□□□ 1.04
NEK4-207ENST00000535191 GOLGA3Q08378 1498 aa21.52■■□□□ 1.04
NEK4-207ENST00000535191 CEP164Q9UPV0 1460 aa21.44■■□□□ 1.02
NEK4-207ENST00000535191 TOP2BQ02880 1626 aa21.39■■□□□ 1.02
NEK4-207ENST00000535191 KIF21BO75037 1637 aa21.36■■□□□ 1.01
NEK4-207ENST00000535191 BIVM-ERCC5R4GMW8 1640 aa21.34■■□□□ 1.01
NEK4-207ENST00000535191 TTBK1Q5TCY1 1321 aaPredicted RBP21.34■■□□□ 1.01
NEK4-207ENST00000535191 CFTRP13569 1480 aa21.33■■□□□ 1.01
NEK4-207ENST00000535191 RAPGEF2Q9Y4G8 1499 aa21.28■■□□□ 1
NEK4-207ENST00000535191 CLIP1P30622 1438 aa21.27■■□□□ 1
NEK4-207ENST00000535191 CUX1P39880 1505 aa21.24■□□□□ 0.99
NEK4-207ENST00000535191 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.23■□□□□ 0.99
NEK4-207ENST00000535191 CC2D2AQ9P2K1 1620 aa21.22■□□□□ 0.99
NEK4-207ENST00000535191 PRDM2Q13029 1718 aa21.2■□□□□ 0.98
NEK4-207ENST00000535191 CCER1Q8TC90 406 aaPredicted RBP21.2■□□□□ 0.98
NEK4-207ENST00000535191 CADPSQ9ULU8 1353 aa21.18■□□□□ 0.98
NEK4-207ENST00000535191 RANGAP1P46060 587 aaPredicted RBP21.17■□□□□ 0.98
NEK4-207ENST00000535191 PRXQ9BXM0 1461 aa21.16■□□□□ 0.98
NEK4-207ENST00000535191 KIF27Q86VH2 1401 aa21.15■□□□□ 0.98
NEK4-207ENST00000535191 VPS8Q8N3P4 1428 aa21.13■□□□□ 0.97
NEK4-207ENST00000535191 APLP2Q06481 763 aa21.1■□□□□ 0.97
NEK4-207ENST00000535191 ERICH3Q5RHP9 1530 aa21.1■□□□□ 0.97
NEK4-207ENST00000535191 IGF1RP08069 1367 aa20.96■□□□□ 0.95
NEK4-207ENST00000535191 CUX2O14529 1486 aa20.96■□□□□ 0.95
NEK4-207ENST00000535191 FANCD2Q9BXW9 1451 aa20.94■□□□□ 0.94
NEK4-207ENST00000535191 HNRNPUL2Q1KMD3 747 aaKnown RBP20.93■□□□□ 0.94
NEK4-207ENST00000535191 ARAP1Q96P48 1450 aa20.92■□□□□ 0.94
NEK4-207ENST00000535191 FGD5Q6ZNL6 1462 aa20.92■□□□□ 0.94
NEK4-207ENST00000535191 CARMIL1Q5VZK9 1371 aa20.86■□□□□ 0.93
NEK4-207ENST00000535191 DNMBPQ6XZF7 1577 aa20.82■□□□□ 0.92
NEK4-207ENST00000535191 KANK4Q5T7N3 995 aaPredicted RBP20.81■□□□□ 0.92
NEK4-207ENST00000535191 ARHGAP35Q9NRY4 1499 aa20.8■□□□□ 0.92
NEK4-207ENST00000535191 NESP48681 1621 aa20.8■□□□□ 0.92
NEK4-207ENST00000535191 LAMC3Q9Y6N6 1575 aa20.8■□□□□ 0.92
NEK4-207ENST00000535191 TOPBP1Q92547 1522 aa20.76■□□□□ 0.91
NEK4-207ENST00000535191 RAD54L2Q9Y4B4 1467 aa20.74■□□□□ 0.91
NEK4-207ENST00000535191 ABCA10Q8WWZ4 1543 aa20.71■□□□□ 0.91
NEK4-207ENST00000535191 POLA1P09884 1462 aaPredicted RBP20.71■□□□□ 0.91
NEK4-207ENST00000535191 DNAJC5BQ9UF47 199 aa20.67■□□□□ 0.9
NEK4-207ENST00000535191 PDS5BQ9NTI5 1447 aa20.67■□□□□ 0.9
NEK4-207ENST00000535191 URB2Q14146 1524 aaKnown RBP20.63■□□□□ 0.89
NEK4-207ENST00000535191 DIEXFQ68CQ4 756 aaKnown RBP20.62■□□□□ 0.89
NEK4-207ENST00000535191 RRBP1Q9P2E9 1410 aaKnown RBP20.61■□□□□ 0.89
NEK4-207ENST00000535191 P3H3Q8IVL6 736 aa20.59■□□□□ 0.89
NEK4-207ENST00000535191 ZNF316A6NFI3 1004 aaPredicted RBP20.58■□□□□ 0.88
NEK4-207ENST00000535191 CUL7Q14999 1698 aa20.58■□□□□ 0.88
NEK4-207ENST00000535191 CCNB3Q8WWL7 1395 aa20.55■□□□□ 0.88
NEK4-207ENST00000535191 MAP3K1Q13233 1512 aa20.55■□□□□ 0.88
NEK4-207ENST00000535191 FHAD1B1AJZ9 1412 aa20.54■□□□□ 0.88
NEK4-207ENST00000535191 WDR97A6NE52 1622 aa20.54■□□□□ 0.88
NEK4-207ENST00000535191 TDRD9Q8NDG6 1382 aaKnown RBP20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms