Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
NKX2-3Q8TAU0 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
NKX2-3Q8TAU0 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
NKX2-3Q8TAU0 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
NKX2-3Q8TAU0 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
NKX2-3Q8TAU0 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC26.68■■□□□ 1.86
NKX2-3Q8TAU0 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC26.68■■□□□ 1.86
NKX2-3Q8TAU0 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
NKX2-3Q8TAU0 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC26.68■■□□□ 1.86
NKX2-3Q8TAU0 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
NKX2-3Q8TAU0 AF213884.3-201ENST00000563833 479 ntBASIC26.68■■□□□ 1.86
NKX2-3Q8TAU0 GRAMD4P4-201ENST00000613563 1115 ntBASIC26.68■■□□□ 1.86
NKX2-3Q8TAU0 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
NKX2-3Q8TAU0 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
NKX2-3Q8TAU0 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC26.68■■□□□ 1.86
NKX2-3Q8TAU0 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC26.68■■□□□ 1.86
NKX2-3Q8TAU0 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
NKX2-3Q8TAU0 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
NKX2-3Q8TAU0 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
NKX2-3Q8TAU0 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
NKX2-3Q8TAU0 PLD4-205ENST00000553861 667 ntTSL 2 BASIC26.67■■□□□ 1.86
NKX2-3Q8TAU0 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
NKX2-3Q8TAU0 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
NKX2-3Q8TAU0 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC26.66■■□□□ 1.86
NKX2-3Q8TAU0 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
NKX2-3Q8TAU0 MIR939-201ENST00000401314 82 ntBASIC26.66■■□□□ 1.86
NKX2-3Q8TAU0 ASB1-202ENST00000409297 878 ntTSL 5 BASIC26.66■■□□□ 1.86
NKX2-3Q8TAU0 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
NKX2-3Q8TAU0 AC087623.3-201ENST00000607047 1098 ntBASIC26.66■■□□□ 1.86
NKX2-3Q8TAU0 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
NKX2-3Q8TAU0 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
NKX2-3Q8TAU0 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
NKX2-3Q8TAU0 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC26.66■■□□□ 1.86
NKX2-3Q8TAU0 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
NKX2-3Q8TAU0 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
NKX2-3Q8TAU0 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
NKX2-3Q8TAU0 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
NKX2-3Q8TAU0 NKILA-201ENST00000613231 537 ntTSL 4 BASIC26.65■■□□□ 1.86
NKX2-3Q8TAU0 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
NKX2-3Q8TAU0 C17orf82-201ENST00000623772 1530 ntBASIC26.65■■□□□ 1.86
NKX2-3Q8TAU0 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
NKX2-3Q8TAU0 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
NKX2-3Q8TAU0 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
NKX2-3Q8TAU0 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC26.64■■□□□ 1.86
NKX2-3Q8TAU0 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
NKX2-3Q8TAU0 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
NKX2-3Q8TAU0 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
NKX2-3Q8TAU0 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
NKX2-3Q8TAU0 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
NKX2-3Q8TAU0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC26.63■■□□□ 1.85
NKX2-3Q8TAU0 CASK-201ENST00000378154 2494 ntTSL 5 BASIC26.63■■□□□ 1.85
NKX2-3Q8TAU0 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC26.63■■□□□ 1.85
NKX2-3Q8TAU0 AC091305.1-201ENST00000479476 895 ntBASIC26.63■■□□□ 1.85
NKX2-3Q8TAU0 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC26.63■■□□□ 1.85
NKX2-3Q8TAU0 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC26.63■■□□□ 1.85
NKX2-3Q8TAU0 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
NKX2-3Q8TAU0 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
NKX2-3Q8TAU0 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
NKX2-3Q8TAU0 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
NKX2-3Q8TAU0 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
NKX2-3Q8TAU0 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
NKX2-3Q8TAU0 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
NKX2-3Q8TAU0 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
NKX2-3Q8TAU0 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
NKX2-3Q8TAU0 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
NKX2-3Q8TAU0 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC26.62■■□□□ 1.85
NKX2-3Q8TAU0 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
NKX2-3Q8TAU0 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC26.61■■□□□ 1.85
NKX2-3Q8TAU0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
NKX2-3Q8TAU0 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC26.61■■□□□ 1.85
NKX2-3Q8TAU0 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
NKX2-3Q8TAU0 DUX4L19-201ENST00000557448 1267 ntBASIC26.61■■□□□ 1.85
NKX2-3Q8TAU0 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC26.61■■□□□ 1.85
NKX2-3Q8TAU0 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
NKX2-3Q8TAU0 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC26.6■■□□□ 1.85
NKX2-3Q8TAU0 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
NKX2-3Q8TAU0 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
NKX2-3Q8TAU0 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC26.6■■□□□ 1.85
NKX2-3Q8TAU0 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC26.6■■□□□ 1.85
NKX2-3Q8TAU0 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
NKX2-3Q8TAU0 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
NKX2-3Q8TAU0 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
NKX2-3Q8TAU0 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
NKX2-3Q8TAU0 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
NKX2-3Q8TAU0 AC006455.2-201ENST00000429931 906 ntBASIC26.59■■□□□ 1.85
NKX2-3Q8TAU0 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC26.59■■□□□ 1.85
NKX2-3Q8TAU0 AP001330.3-201ENST00000520123 633 ntBASIC26.59■■□□□ 1.85
NKX2-3Q8TAU0 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC26.59■■□□□ 1.85
NKX2-3Q8TAU0 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC26.59■■□□□ 1.85
NKX2-3Q8TAU0 AC079630.1-202ENST00000618127 1840 ntBASIC26.59■■□□□ 1.85
NKX2-3Q8TAU0 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC26.59■■□□□ 1.85
NKX2-3Q8TAU0 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC26.59■■□□□ 1.85
NKX2-3Q8TAU0 GATM-206ENST00000558336 1522 ntTSL 2 BASIC26.59■■□□□ 1.85
NKX2-3Q8TAU0 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
NKX2-3Q8TAU0 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
NKX2-3Q8TAU0 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC26.58■■□□□ 1.85
NKX2-3Q8TAU0 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
NKX2-3Q8TAU0 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
NKX2-3Q8TAU0 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
NKX2-3Q8TAU0 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms