Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 AC009086.3-201ENST00000623486 1008 ntBASIC31.17■■■□□ 2.58
BRD4O60885 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
BRD4O60885 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
BRD4O60885 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
BRD4O60885 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
BRD4O60885 MIR3181-201ENST00000578512 73 ntBASIC31.16■■■□□ 2.58
BRD4O60885 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
BRD4O60885 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
BRD4O60885 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
BRD4O60885 AL162430.1-201ENST00000480705 870 ntBASIC31.15■■■□□ 2.58
BRD4O60885 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
BRD4O60885 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC31.15■■■□□ 2.58
BRD4O60885 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC31.14■■■□□ 2.58
BRD4O60885 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
BRD4O60885 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
BRD4O60885 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC31.14■■■□□ 2.58
BRD4O60885 ABCB10P4-201ENST00000566803 2184 ntBASIC31.14■■■□□ 2.57
BRD4O60885 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
BRD4O60885 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC31.13■■■□□ 2.57
BRD4O60885 JTB-203ENST00000368589 1216 ntTSL 2 BASIC31.12■■■□□ 2.57
BRD4O60885 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC31.12■■■□□ 2.57
BRD4O60885 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
BRD4O60885 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
BRD4O60885 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC31.12■■■□□ 2.57
BRD4O60885 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC31.11■■■□□ 2.57
BRD4O60885 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC31.11■■■□□ 2.57
BRD4O60885 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC31.11■■■□□ 2.57
BRD4O60885 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC31.11■■■□□ 2.57
BRD4O60885 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC31.1■■■□□ 2.57
BRD4O60885 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
BRD4O60885 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC31.1■■■□□ 2.57
BRD4O60885 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC31.1■■■□□ 2.57
BRD4O60885 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
BRD4O60885 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
BRD4O60885 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
BRD4O60885 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC31.09■■■□□ 2.57
BRD4O60885 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC31.09■■■□□ 2.57
BRD4O60885 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC31.09■■■□□ 2.57
BRD4O60885 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
BRD4O60885 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
BRD4O60885 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC31.09■■■□□ 2.57
BRD4O60885 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
BRD4O60885 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
BRD4O60885 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
BRD4O60885 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC31.09■■■□□ 2.57
BRD4O60885 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
BRD4O60885 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
BRD4O60885 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
BRD4O60885 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
BRD4O60885 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
BRD4O60885 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC31.08■■■□□ 2.57
BRD4O60885 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
BRD4O60885 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
BRD4O60885 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC31.07■■■□□ 2.56
BRD4O60885 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC31.07■■■□□ 2.56
BRD4O60885 NKILA-201ENST00000613231 537 ntTSL 4 BASIC31.07■■■□□ 2.56
BRD4O60885 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC31.07■■■□□ 2.56
BRD4O60885 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
BRD4O60885 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
BRD4O60885 AK1-201ENST00000223836 736 ntTSL 3 BASIC31.06■■■□□ 2.56
BRD4O60885 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC31.06■■■□□ 2.56
BRD4O60885 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
BRD4O60885 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
BRD4O60885 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
BRD4O60885 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
BRD4O60885 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
BRD4O60885 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
BRD4O60885 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC31.05■■■□□ 2.56
BRD4O60885 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC31.05■■■□□ 2.56
BRD4O60885 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC31.05■■■□□ 2.56
BRD4O60885 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
BRD4O60885 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC31.05■■■□□ 2.56
BRD4O60885 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
BRD4O60885 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC31.05■■■□□ 2.56
BRD4O60885 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
BRD4O60885 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC31.04■■■□□ 2.56
BRD4O60885 GTSE1-AS1-202ENST00000623117 1518 ntBASIC31.04■■■□□ 2.56
BRD4O60885 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
BRD4O60885 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
BRD4O60885 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC31.04■■■□□ 2.56
BRD4O60885 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
BRD4O60885 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
BRD4O60885 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
BRD4O60885 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
BRD4O60885 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
BRD4O60885 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC31.03■■■□□ 2.56
BRD4O60885 GLI3-203ENST00000437480 451 ntTSL 2 BASIC31.03■■■□□ 2.56
BRD4O60885 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC31.03■■■□□ 2.56
BRD4O60885 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
BRD4O60885 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC31.02■■■□□ 2.56
BRD4O60885 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC31.02■■■□□ 2.56
BRD4O60885 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
BRD4O60885 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC31.02■■■□□ 2.56
BRD4O60885 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC31.02■■■□□ 2.56
BRD4O60885 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
BRD4O60885 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
BRD4O60885 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
BRD4O60885 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
BRD4O60885 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
BRD4O60885 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms