Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.51
CDX2Q99626 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.7■■■□□ 2.51
CDX2Q99626 AC087741.3-201ENST00000624270 1347 ntBASIC30.7■■■□□ 2.5
CDX2Q99626 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.68■■■□□ 2.5
CDX2Q99626 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.67■■■□□ 2.5
CDX2Q99626 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
CDX2Q99626 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.65■■■□□ 2.5
CDX2Q99626 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.65■■■□□ 2.5
CDX2Q99626 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.64■■■□□ 2.5
CDX2Q99626 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30.62■■■□□ 2.49
CDX2Q99626 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
CDX2Q99626 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.6■■■□□ 2.49
CDX2Q99626 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.6■■■□□ 2.49
CDX2Q99626 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CDX2Q99626 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.58■■■□□ 2.49
CDX2Q99626 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.58■■■□□ 2.49
CDX2Q99626 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.57■■■□□ 2.48
CDX2Q99626 AC044849.2-201ENST00000606596 710 ntBASIC30.55■■■□□ 2.48
CDX2Q99626 DUX4L28-201ENST00000623687 678 ntBASIC30.55■■■□□ 2.48
CDX2Q99626 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
CDX2Q99626 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.52■■■□□ 2.48
CDX2Q99626 EBPL-202ENST00000378268 680 ntTSL 3 BASIC30.51■■■□□ 2.47
CDX2Q99626 ZNRF2P2-203ENST00000454624 420 ntBASIC30.5■■■□□ 2.47
CDX2Q99626 AL133380.1-201ENST00000506013 324 ntBASIC30.49■■■□□ 2.47
CDX2Q99626 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
CDX2Q99626 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.45■■■□□ 2.47
CDX2Q99626 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CDX2Q99626 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.44■■■□□ 2.46
CDX2Q99626 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CDX2Q99626 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CDX2Q99626 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC30.43■■■□□ 2.46
CDX2Q99626 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC30.43■■■□□ 2.46
CDX2Q99626 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CDX2Q99626 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CDX2Q99626 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC30.38■■■□□ 2.45
CDX2Q99626 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CDX2Q99626 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.36■■■□□ 2.45
CDX2Q99626 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.35■■■□□ 2.45
CDX2Q99626 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
CDX2Q99626 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.33■■■□□ 2.45
CDX2Q99626 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CDX2Q99626 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CDX2Q99626 MIR4449-201ENST00000578365 66 ntBASIC30.31■■■□□ 2.44
CDX2Q99626 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CDX2Q99626 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CDX2Q99626 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.29■■■□□ 2.44
CDX2Q99626 MIR762-201ENST00000390236 83 ntBASIC30.29■■■□□ 2.44
CDX2Q99626 AC005559.1-201ENST00000589661 871 ntBASIC30.27■■■□□ 2.44
CDX2Q99626 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.26■■■□□ 2.43
CDX2Q99626 AC145285.7-201ENST00000614819 1539 ntBASIC30.24■■■□□ 2.43
CDX2Q99626 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CDX2Q99626 BOD1-206ENST00000480951 814 ntTSL 2 BASIC30.24■■■□□ 2.43
CDX2Q99626 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CDX2Q99626 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
CDX2Q99626 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.21■■■□□ 2.43
CDX2Q99626 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.18■■■□□ 2.42
CDX2Q99626 HGH1-207ENST00000628266 258 ntTSL 5 BASIC30.17■■■□□ 2.42
CDX2Q99626 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CDX2Q99626 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CDX2Q99626 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CDX2Q99626 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CDX2Q99626 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
CDX2Q99626 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
CDX2Q99626 MIR639-201ENST00000384974 98 ntBASIC30.11■■■□□ 2.41
CDX2Q99626 HSD17B1P1-201ENST00000590052 955 ntBASIC30.11■■■□□ 2.41
CDX2Q99626 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
CDX2Q99626 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
CDX2Q99626 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.08■■■□□ 2.41
CDX2Q99626 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.08■■■□□ 2.41
CDX2Q99626 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
CDX2Q99626 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.07■■■□□ 2.4
CDX2Q99626 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
CDX2Q99626 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.06■■■□□ 2.4
CDX2Q99626 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.05■■■□□ 2.4
CDX2Q99626 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.05■■■□□ 2.4
CDX2Q99626 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.05■■■□□ 2.4
CDX2Q99626 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.03■■■□□ 2.4
CDX2Q99626 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CDX2Q99626 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.02■■■□□ 2.4
CDX2Q99626 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
CDX2Q99626 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CDX2Q99626 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.02■■■□□ 2.4
CDX2Q99626 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
CDX2Q99626 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30■■■□□ 2.39
CDX2Q99626 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
CDX2Q99626 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CDX2Q99626 CALM3-209ENST00000597743 577 ntTSL 4 BASIC29.98■■■□□ 2.39
CDX2Q99626 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC29.96■■■□□ 2.39
CDX2Q99626 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CDX2Q99626 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.92■■■□□ 2.38
CDX2Q99626 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.91■■■□□ 2.38
CDX2Q99626 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC29.91■■■□□ 2.38
CDX2Q99626 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC29.91■■■□□ 2.38
CDX2Q99626 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC29.9■■■□□ 2.38
CDX2Q99626 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC29.9■■■□□ 2.38
CDX2Q99626 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC29.88■■■□□ 2.37
CDX2Q99626 DUX4L29-201ENST00000425409 679 ntBASIC29.88■■■□□ 2.37
CDX2Q99626 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC29.88■■■□□ 2.37
CDX2Q99626 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC29.86■■■□□ 2.37
CDX2Q99626 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC29.85■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 9.1 ms