Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC145285.7-201ENST00000614819 1539 ntBASIC34.99■■■■□ 3.19
CCDC88AQ3V6T2 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC34.99■■■■□ 3.19
CCDC88AQ3V6T2 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
CCDC88AQ3V6T2 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
CCDC88AQ3V6T2 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
CCDC88AQ3V6T2 AL133380.1-201ENST00000506013 324 ntBASIC34.96■■■■□ 3.19
CCDC88AQ3V6T2 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC34.94■■■■□ 3.18
CCDC88AQ3V6T2 MLEC-202ENST00000412616 841 ntTSL 3 BASIC34.94■■■■□ 3.18
CCDC88AQ3V6T2 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
CCDC88AQ3V6T2 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC34.91■■■■□ 3.18
CCDC88AQ3V6T2 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
CCDC88AQ3V6T2 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
CCDC88AQ3V6T2 ABHD17AP4-201ENST00000411545 909 ntBASIC34.9■■■■□ 3.18
CCDC88AQ3V6T2 MVK-208ENST00000539696 608 ntTSL 5 BASIC34.89■■■■□ 3.18
CCDC88AQ3V6T2 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC34.88■■■■□ 3.17
CCDC88AQ3V6T2 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
CCDC88AQ3V6T2 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC34.87■■■■□ 3.17
CCDC88AQ3V6T2 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
CCDC88AQ3V6T2 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC34.86■■■■□ 3.17
CCDC88AQ3V6T2 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
CCDC88AQ3V6T2 DUX4L28-201ENST00000623687 678 ntBASIC34.84■■■■□ 3.17
CCDC88AQ3V6T2 PVT1-219ENST00000523427 938 ntTSL 3 BASIC34.84■■■■□ 3.17
CCDC88AQ3V6T2 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
CCDC88AQ3V6T2 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC34.82■■■■□ 3.17
CCDC88AQ3V6T2 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC34.8■■■■□ 3.16
CCDC88AQ3V6T2 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
CCDC88AQ3V6T2 EBPL-202ENST00000378268 680 ntTSL 3 BASIC34.79■■■■□ 3.16
CCDC88AQ3V6T2 AC044849.2-201ENST00000606596 710 ntBASIC34.79■■■■□ 3.16
CCDC88AQ3V6T2 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
CCDC88AQ3V6T2 MIR3665-201ENST00000578708 105 ntBASIC34.78■■■■□ 3.16
CCDC88AQ3V6T2 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC34.78■■■■□ 3.16
CCDC88AQ3V6T2 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC34.77■■■■□ 3.16
CCDC88AQ3V6T2 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC34.77■■■■□ 3.16
CCDC88AQ3V6T2 AC087741.3-201ENST00000624270 1347 ntBASIC34.74■■■■□ 3.15
CCDC88AQ3V6T2 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
CCDC88AQ3V6T2 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC34.73■■■■□ 3.15
CCDC88AQ3V6T2 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC34.71■■■■□ 3.15
CCDC88AQ3V6T2 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC34.69■■■■□ 3.14
CCDC88AQ3V6T2 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC34.69■■■■□ 3.14
CCDC88AQ3V6T2 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC34.69■■■■□ 3.14
CCDC88AQ3V6T2 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC34.68■■■■□ 3.14
CCDC88AQ3V6T2 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC34.68■■■■□ 3.14
CCDC88AQ3V6T2 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC34.66■■■■□ 3.14
CCDC88AQ3V6T2 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC34.66■■■■□ 3.14
CCDC88AQ3V6T2 MBP-237ENST00000579129 1052 ntTSL 5 BASIC34.65■■■■□ 3.14
CCDC88AQ3V6T2 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
CCDC88AQ3V6T2 AC005559.1-201ENST00000589661 871 ntBASIC34.56■■■■□ 3.12
CCDC88AQ3V6T2 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
CCDC88AQ3V6T2 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC34.53■■■■□ 3.12
CCDC88AQ3V6T2 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC34.53■■■■□ 3.12
CCDC88AQ3V6T2 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC34.52■■■■□ 3.12
CCDC88AQ3V6T2 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
CCDC88AQ3V6T2 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
CCDC88AQ3V6T2 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC34.52■■■■□ 3.12
CCDC88AQ3V6T2 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
CCDC88AQ3V6T2 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC34.51■■■■□ 3.12
CCDC88AQ3V6T2 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
CCDC88AQ3V6T2 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC34.5■■■■□ 3.11
CCDC88AQ3V6T2 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC34.48■■■■□ 3.11
CCDC88AQ3V6T2 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
CCDC88AQ3V6T2 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC34.46■■■■□ 3.11
CCDC88AQ3V6T2 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
CCDC88AQ3V6T2 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC34.44■■■■□ 3.1
CCDC88AQ3V6T2 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC34.43■■■■□ 3.1
CCDC88AQ3V6T2 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC34.43■■■■□ 3.1
CCDC88AQ3V6T2 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC34.43■■■■□ 3.1
CCDC88AQ3V6T2 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC34.42■■■■□ 3.1
CCDC88AQ3V6T2 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC34.42■■■■□ 3.1
CCDC88AQ3V6T2 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC34.42■■■■□ 3.1
CCDC88AQ3V6T2 MIR762-201ENST00000390236 83 ntBASIC34.4■■■■□ 3.1
CCDC88AQ3V6T2 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
CCDC88AQ3V6T2 CHML-205ENST00000638160 705 ntTSL 3 BASIC34.38■■■■□ 3.09
CCDC88AQ3V6T2 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC34.36■■■■□ 3.09
CCDC88AQ3V6T2 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC34.35■■■■□ 3.09
CCDC88AQ3V6T2 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
CCDC88AQ3V6T2 RPS2-202ENST00000526522 924 ntTSL 2 BASIC34.33■■■■□ 3.09
CCDC88AQ3V6T2 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
CCDC88AQ3V6T2 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC34.32■■■■□ 3.08
CCDC88AQ3V6T2 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC34.31■■■■□ 3.08
CCDC88AQ3V6T2 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC34.3■■■■□ 3.08
CCDC88AQ3V6T2 BOD1-206ENST00000480951 814 ntTSL 2 BASIC34.3■■■■□ 3.08
CCDC88AQ3V6T2 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
CCDC88AQ3V6T2 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC34.29■■■■□ 3.08
CCDC88AQ3V6T2 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CCDC88AQ3V6T2 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
CCDC88AQ3V6T2 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
CCDC88AQ3V6T2 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
CCDC88AQ3V6T2 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
CCDC88AQ3V6T2 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC34.22■■■■□ 3.07
CCDC88AQ3V6T2 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
CCDC88AQ3V6T2 HGH1-207ENST00000628266 258 ntTSL 5 BASIC34.2■■■■□ 3.07
CCDC88AQ3V6T2 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC34.2■■■■□ 3.07
CCDC88AQ3V6T2 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
CCDC88AQ3V6T2 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC34.19■■■■□ 3.06
CCDC88AQ3V6T2 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC34.19■■■■□ 3.06
CCDC88AQ3V6T2 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC34.18■■■■□ 3.06
CCDC88AQ3V6T2 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC34.17■■■■□ 3.06
CCDC88AQ3V6T2 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC34.17■■■■□ 3.06
CCDC88AQ3V6T2 DENR-202ENST00000455982 1052 ntTSL 5 BASIC34.16■■■■□ 3.06
CCDC88AQ3V6T2 ZNRF2P2-203ENST00000454624 420 ntBASIC34.15■■■■□ 3.06
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms