Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL4A4P53420 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL4A4P53420 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL4A4P53420 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
COL4A4P53420 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.47■■■□□ 2.47
COL4A4P53420 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.45■■■□□ 2.47
COL4A4P53420 AC145285.7-201ENST00000614819 1539 ntBASIC30.43■■■□□ 2.46
COL4A4P53420 AL133380.1-201ENST00000506013 324 ntBASIC30.42■■■□□ 2.46
COL4A4P53420 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
COL4A4P53420 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.39■■■□□ 2.46
COL4A4P53420 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.39■■■□□ 2.46
COL4A4P53420 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
COL4A4P53420 MIR7108-201ENST00000614319 87 ntBASIC30.38■■■□□ 2.45
COL4A4P53420 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL4A4P53420 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL4A4P53420 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
COL4A4P53420 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.36■■■□□ 2.45
COL4A4P53420 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.33■■■□□ 2.45
COL4A4P53420 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.32■■■□□ 2.44
COL4A4P53420 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
COL4A4P53420 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL4A4P53420 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL4A4P53420 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.3■■■□□ 2.44
COL4A4P53420 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
COL4A4P53420 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
COL4A4P53420 HLA-V-202ENST00000446817 847 ntBASIC30.3■■■□□ 2.44
COL4A4P53420 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
COL4A4P53420 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
COL4A4P53420 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.29■■■□□ 2.44
COL4A4P53420 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.29■■■□□ 2.44
COL4A4P53420 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
COL4A4P53420 DUX4L28-201ENST00000623687 678 ntBASIC30.27■■■□□ 2.44
COL4A4P53420 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL4A4P53420 EBPL-202ENST00000378268 680 ntTSL 3 BASIC30.26■■■□□ 2.43
COL4A4P53420 MLEC-202ENST00000412616 841 ntTSL 3 BASIC30.26■■■□□ 2.43
COL4A4P53420 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
COL4A4P53420 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.24■■■□□ 2.43
COL4A4P53420 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL4A4P53420 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.23■■■□□ 2.43
COL4A4P53420 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
COL4A4P53420 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.23■■■□□ 2.43
COL4A4P53420 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL4A4P53420 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.21■■■□□ 2.43
COL4A4P53420 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.2■■■□□ 2.43
COL4A4P53420 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
COL4A4P53420 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.18■■■□□ 2.42
COL4A4P53420 MIR3665-201ENST00000578708 105 ntBASIC30.18■■■□□ 2.42
COL4A4P53420 ABHD17AP4-201ENST00000411545 909 ntBASIC30.17■■■□□ 2.42
COL4A4P53420 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.17■■■□□ 2.42
COL4A4P53420 AC087741.3-201ENST00000624270 1347 ntBASIC30.17■■■□□ 2.42
COL4A4P53420 AC044849.2-201ENST00000606596 710 ntBASIC30.17■■■□□ 2.42
COL4A4P53420 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.42
COL4A4P53420 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.14■■■□□ 2.42
COL4A4P53420 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.41
COL4A4P53420 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
COL4A4P53420 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.12■■■□□ 2.41
COL4A4P53420 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
COL4A4P53420 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.07■■■□□ 2.4
COL4A4P53420 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.06■■■□□ 2.4
COL4A4P53420 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.03■■■□□ 2.4
COL4A4P53420 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.03■■■□□ 2.4
COL4A4P53420 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.01■■■□□ 2.39
COL4A4P53420 AC005559.1-201ENST00000589661 871 ntBASIC29.98■■■□□ 2.39
COL4A4P53420 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.98■■■□□ 2.39
COL4A4P53420 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.97■■■□□ 2.39
COL4A4P53420 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
COL4A4P53420 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC29.95■■■□□ 2.39
COL4A4P53420 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC29.95■■■□□ 2.39
COL4A4P53420 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
COL4A4P53420 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
COL4A4P53420 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
COL4A4P53420 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.93■■■□□ 2.38
COL4A4P53420 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
COL4A4P53420 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
COL4A4P53420 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
COL4A4P53420 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
COL4A4P53420 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
COL4A4P53420 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
COL4A4P53420 MIR762-201ENST00000390236 83 ntBASIC29.89■■■□□ 2.38
COL4A4P53420 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC29.89■■■□□ 2.38
COL4A4P53420 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
COL4A4P53420 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.88■■■□□ 2.37
COL4A4P53420 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC29.86■■■□□ 2.37
COL4A4P53420 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.86■■■□□ 2.37
COL4A4P53420 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.86■■■□□ 2.37
COL4A4P53420 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.85■■■□□ 2.37
COL4A4P53420 CHML-205ENST00000638160 705 ntTSL 3 BASIC29.84■■■□□ 2.37
COL4A4P53420 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC29.83■■■□□ 2.37
COL4A4P53420 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL4A4P53420 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL4A4P53420 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC29.8■■■□□ 2.36
COL4A4P53420 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC29.8■■■□□ 2.36
COL4A4P53420 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
COL4A4P53420 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC29.79■■■□□ 2.36
COL4A4P53420 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL4A4P53420 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
COL4A4P53420 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.75■■■□□ 2.35
COL4A4P53420 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC29.74■■■□□ 2.35
COL4A4P53420 RPS2-202ENST00000526522 924 ntTSL 2 BASIC29.73■■■□□ 2.35
COL4A4P53420 DENR-202ENST00000455982 1052 ntTSL 5 BASIC29.72■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms