Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC33.54■■■□□ 2.96
CTCFP49711 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
CTCFP49711 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC33.53■■■□□ 2.96
CTCFP49711 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC33.52■■■□□ 2.96
CTCFP49711 AC087741.3-201ENST00000624270 1347 ntBASIC33.52■■■□□ 2.96
CTCFP49711 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC33.51■■■□□ 2.95
CTCFP49711 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC33.51■■■□□ 2.95
CTCFP49711 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC33.5■■■□□ 2.95
CTCFP49711 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC33.46■■■□□ 2.95
CTCFP49711 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC33.46■■■□□ 2.95
CTCFP49711 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC33.45■■■□□ 2.95
CTCFP49711 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC33.42■■■□□ 2.94
CTCFP49711 AC044849.2-201ENST00000606596 710 ntBASIC33.42■■■□□ 2.94
CTCFP49711 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC33.41■■■□□ 2.94
CTCFP49711 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
CTCFP49711 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC33.37■■■□□ 2.93
CTCFP49711 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
CTCFP49711 ZNRF2P2-203ENST00000454624 420 ntBASIC33.35■■■□□ 2.93
CTCFP49711 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
CTCFP49711 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC33.32■■■□□ 2.92
CTCFP49711 DUX4L28-201ENST00000623687 678 ntBASIC33.3■■■□□ 2.92
CTCFP49711 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC33.28■■■□□ 2.92
CTCFP49711 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC33.28■■■□□ 2.92
CTCFP49711 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC33.27■■■□□ 2.92
CTCFP49711 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC33.25■■■□□ 2.91
CTCFP49711 MIR4449-201ENST00000578365 66 ntBASIC33.25■■■□□ 2.91
CTCFP49711 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
CTCFP49711 EBPL-202ENST00000378268 680 ntTSL 3 BASIC33.22■■■□□ 2.91
CTCFP49711 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC33.22■■■□□ 2.91
CTCFP49711 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC33.21■■■□□ 2.91
CTCFP49711 RPS2-202ENST00000526522 924 ntTSL 2 BASIC33.18■■■□□ 2.9
CTCFP49711 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC33.18■■■□□ 2.9
CTCFP49711 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
CTCFP49711 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
CTCFP49711 AL133380.1-201ENST00000506013 324 ntBASIC33.11■■■□□ 2.89
CTCFP49711 CHML-205ENST00000638160 705 ntTSL 3 BASIC33.09■■■□□ 2.89
CTCFP49711 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC33.07■■■□□ 2.88
CTCFP49711 HSD17B1P1-201ENST00000590052 955 ntBASIC33.06■■■□□ 2.88
CTCFP49711 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC33.06■■■□□ 2.88
CTCFP49711 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
CTCFP49711 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
CTCFP49711 BOD1-206ENST00000480951 814 ntTSL 2 BASIC33.04■■■□□ 2.88
CTCFP49711 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC33.03■■■□□ 2.88
CTCFP49711 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
CTCFP49711 MIR639-201ENST00000384974 98 ntBASIC33■■■□□ 2.87
CTCFP49711 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC33■■■□□ 2.87
CTCFP49711 AC005559.1-201ENST00000589661 871 ntBASIC33■■■□□ 2.87
CTCFP49711 BRD4-212ENST00000630599 726 ntTSL 2 BASIC32.99■■■□□ 2.87
CTCFP49711 MIR762-201ENST00000390236 83 ntBASIC32.97■■■□□ 2.87
CTCFP49711 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
CTCFP49711 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC32.97■■■□□ 2.87
CTCFP49711 HGH1-207ENST00000628266 258 ntTSL 5 BASIC32.94■■■□□ 2.86
CTCFP49711 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC32.93■■■□□ 2.86
CTCFP49711 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC32.93■■■□□ 2.86
CTCFP49711 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC32.91■■■□□ 2.86
CTCFP49711 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.9■■■□□ 2.86
CTCFP49711 CALM3-209ENST00000597743 577 ntTSL 4 BASIC32.9■■■□□ 2.86
CTCFP49711 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
CTCFP49711 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
CTCFP49711 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
CTCFP49711 MVK-208ENST00000539696 608 ntTSL 5 BASIC32.89■■■□□ 2.86
CTCFP49711 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
CTCFP49711 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
CTCFP49711 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
CTCFP49711 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
CTCFP49711 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
CTCFP49711 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC32.78■■■□□ 2.84
CTCFP49711 MACF1-219ENST00000484793 834 ntTSL 2 BASIC32.77■■■□□ 2.84
CTCFP49711 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC32.77■■■□□ 2.84
CTCFP49711 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC32.76■■■□□ 2.83
CTCFP49711 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC32.76■■■□□ 2.83
CTCFP49711 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC32.76■■■□□ 2.83
CTCFP49711 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
CTCFP49711 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
CTCFP49711 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC32.74■■■□□ 2.83
CTCFP49711 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC32.73■■■□□ 2.83
CTCFP49711 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC32.68■■■□□ 2.82
CTCFP49711 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC32.68■■■□□ 2.82
CTCFP49711 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.68■■■□□ 2.82
CTCFP49711 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
CTCFP49711 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
CTCFP49711 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
CTCFP49711 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC32.64■■■□□ 2.82
CTCFP49711 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC32.63■■■□□ 2.81
CTCFP49711 DUX4L29-201ENST00000425409 679 ntBASIC32.61■■■□□ 2.81
CTCFP49711 AC145285.7-201ENST00000614819 1539 ntBASIC32.61■■■□□ 2.81
CTCFP49711 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
CTCFP49711 ABHD17AP3-201ENST00000503096 1137 ntBASIC32.59■■■□□ 2.81
CTCFP49711 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
CTCFP49711 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
CTCFP49711 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC32.54■■■□□ 2.8
CTCFP49711 AC016575.1-201ENST00000607026 382 ntBASIC32.54■■■□□ 2.8
CTCFP49711 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CTCFP49711 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
CTCFP49711 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC32.52■■■□□ 2.8
CTCFP49711 MIR3648-2-201ENST00000581792 180 ntBASIC32.52■■■□□ 2.8
CTCFP49711 MIR3648-1-201ENST00000615959 180 ntBASIC32.52■■■□□ 2.8
CTCFP49711 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC32.51■■■□□ 2.8
CTCFP49711 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC32.51■■■□□ 2.79
CTCFP49711 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC32.5■■■□□ 2.79
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms