Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC32.6■■■□□ 2.81
HTTP42858 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.59■■■□□ 2.81
HTTP42858 MBP-237ENST00000579129 1052 ntTSL 5 BASIC32.59■■■□□ 2.81
HTTP42858 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC32.57■■■□□ 2.81
HTTP42858 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC32.56■■■□□ 2.8
HTTP42858 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC32.54■■■□□ 2.8
HTTP42858 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC32.54■■■□□ 2.8
HTTP42858 AC087741.3-201ENST00000624270 1347 ntBASIC32.54■■■□□ 2.8
HTTP42858 MLEC-202ENST00000412616 841 ntTSL 3 BASIC32.52■■■□□ 2.8
HTTP42858 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC32.51■■■□□ 2.79
HTTP42858 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
HTTP42858 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
HTTP42858 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
HTTP42858 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC32.45■■■□□ 2.79
HTTP42858 MIR3665-201ENST00000578708 105 ntBASIC32.44■■■□□ 2.78
HTTP42858 DUX4L28-201ENST00000623687 678 ntBASIC32.44■■■□□ 2.78
HTTP42858 AL133380.1-201ENST00000506013 324 ntBASIC32.43■■■□□ 2.78
HTTP42858 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
HTTP42858 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC32.41■■■□□ 2.78
HTTP42858 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC32.38■■■□□ 2.77
HTTP42858 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC32.35■■■□□ 2.77
HTTP42858 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC32.34■■■□□ 2.77
HTTP42858 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
HTTP42858 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
HTTP42858 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC32.33■■■□□ 2.77
HTTP42858 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC32.33■■■□□ 2.77
HTTP42858 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
HTTP42858 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC32.3■■■□□ 2.76
HTTP42858 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC32.29■■■□□ 2.76
HTTP42858 AC044849.2-201ENST00000606596 710 ntBASIC32.29■■■□□ 2.76
HTTP42858 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
HTTP42858 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC32.28■■■□□ 2.76
HTTP42858 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC32.27■■■□□ 2.76
HTTP42858 EBPL-202ENST00000378268 680 ntTSL 3 BASIC32.26■■■□□ 2.75
HTTP42858 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
HTTP42858 RPS2-202ENST00000526522 924 ntTSL 2 BASIC32.23■■■□□ 2.75
HTTP42858 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC32.23■■■□□ 2.75
HTTP42858 MVK-208ENST00000539696 608 ntTSL 5 BASIC32.21■■■□□ 2.75
HTTP42858 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
HTTP42858 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
HTTP42858 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC32.18■■■□□ 2.74
HTTP42858 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC32.17■■■□□ 2.74
HTTP42858 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC32.17■■■□□ 2.74
HTTP42858 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC32.17■■■□□ 2.74
HTTP42858 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
HTTP42858 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
HTTP42858 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC32.15■■■□□ 2.74
HTTP42858 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC32.15■■■□□ 2.74
HTTP42858 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
HTTP42858 MIR762-201ENST00000390236 83 ntBASIC32.13■■■□□ 2.73
HTTP42858 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
HTTP42858 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC32.11■■■□□ 2.73
HTTP42858 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC32.11■■■□□ 2.73
HTTP42858 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC32.11■■■□□ 2.73
HTTP42858 MIR4449-201ENST00000578365 66 ntBASIC32.11■■■□□ 2.73
HTTP42858 AC005559.1-201ENST00000589661 871 ntBASIC32.1■■■□□ 2.73
HTTP42858 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
HTTP42858 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC32.07■■■□□ 2.72
HTTP42858 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
HTTP42858 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.03■■■□□ 2.72
HTTP42858 CHML-205ENST00000638160 705 ntTSL 3 BASIC32.02■■■□□ 2.72
HTTP42858 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
HTTP42858 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC32■■■□□ 2.71
HTTP42858 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
HTTP42858 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.98■■■□□ 2.71
HTTP42858 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
HTTP42858 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC31.97■■■□□ 2.71
HTTP42858 ILK-212ENST00000532063 1617 ntTSL 2 BASIC31.96■■■□□ 2.71
HTTP42858 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31.95■■■□□ 2.71
HTTP42858 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.93■■■□□ 2.7
HTTP42858 ZNRF2P2-203ENST00000454624 420 ntBASIC31.92■■■□□ 2.7
HTTP42858 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31.91■■■□□ 2.7
HTTP42858 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC31.91■■■□□ 2.7
HTTP42858 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
HTTP42858 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.89■■■□□ 2.69
HTTP42858 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.88■■■□□ 2.69
HTTP42858 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
HTTP42858 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
HTTP42858 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.86■■■□□ 2.69
HTTP42858 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
HTTP42858 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.83■■■□□ 2.69
HTTP42858 HSD17B1P1-201ENST00000590052 955 ntBASIC31.82■■■□□ 2.68
HTTP42858 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
HTTP42858 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.81■■■□□ 2.68
HTTP42858 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
HTTP42858 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.8■■■□□ 2.68
HTTP42858 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
HTTP42858 MIR639-201ENST00000384974 98 ntBASIC31.78■■■□□ 2.68
HTTP42858 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
HTTP42858 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.77■■■□□ 2.68
HTTP42858 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.76■■■□□ 2.68
HTTP42858 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
HTTP42858 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.74■■■□□ 2.67
HTTP42858 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC31.73■■■□□ 2.67
HTTP42858 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
HTTP42858 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.7■■■□□ 2.67
HTTP42858 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.7■■■□□ 2.66
HTTP42858 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
HTTP42858 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.7■■■□□ 2.66
HTTP42858 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms