Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC26■■□□□ 1.75
SOX3P41225 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
SOX3P41225 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
SOX3P41225 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
SOX3P41225 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SOX3P41225 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
SOX3P41225 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC25.96■■□□□ 1.75
SOX3P41225 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
SOX3P41225 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC25.96■■□□□ 1.75
SOX3P41225 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
SOX3P41225 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
SOX3P41225 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC25.91■■□□□ 1.74
SOX3P41225 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC25.9■■□□□ 1.74
SOX3P41225 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC25.9■■□□□ 1.74
SOX3P41225 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
SOX3P41225 RARRES2P7-201ENST00000567349 469 ntBASIC25.89■■□□□ 1.74
SOX3P41225 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC25.89■■□□□ 1.73
SOX3P41225 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC25.88■■□□□ 1.73
SOX3P41225 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
SOX3P41225 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC25.88■■□□□ 1.73
SOX3P41225 KLF16-203ENST00000592313 508 ntTSL 3 BASIC25.85■■□□□ 1.73
SOX3P41225 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SOX3P41225 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SOX3P41225 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SOX3P41225 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SOX3P41225 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SOX3P41225 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
SOX3P41225 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
SOX3P41225 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC25.79■■□□□ 1.72
SOX3P41225 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SOX3P41225 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC25.78■■□□□ 1.72
SOX3P41225 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC25.77■■□□□ 1.72
SOX3P41225 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC25.76■■□□□ 1.71
SOX3P41225 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SOX3P41225 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC25.76■■□□□ 1.71
SOX3P41225 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SOX3P41225 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SOX3P41225 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SOX3P41225 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SOX3P41225 SETD8P1-201ENST00000623146 1180 ntBASIC25.72■■□□□ 1.71
SOX3P41225 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC25.72■■□□□ 1.71
SOX3P41225 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SOX3P41225 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.71
SOX3P41225 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SOX3P41225 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.7
SOX3P41225 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
SOX3P41225 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC25.69■■□□□ 1.7
SOX3P41225 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC25.68■■□□□ 1.7
SOX3P41225 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC25.68■■□□□ 1.7
SOX3P41225 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC25.67■■□□□ 1.7
SOX3P41225 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
SOX3P41225 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
SOX3P41225 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
SOX3P41225 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SOX3P41225 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
SOX3P41225 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC25.63■■□□□ 1.69
SOX3P41225 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC25.63■■□□□ 1.69
SOX3P41225 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC25.62■■□□□ 1.69
SOX3P41225 AC097358.2-201ENST00000607541 1159 ntBASIC25.62■■□□□ 1.69
SOX3P41225 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SOX3P41225 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
SOX3P41225 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SOX3P41225 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SOX3P41225 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC25.6■■□□□ 1.69
SOX3P41225 AC136428.2-201ENST00000563187 214 ntBASIC25.59■■□□□ 1.69
SOX3P41225 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SOX3P41225 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SOX3P41225 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC25.58■■□□□ 1.69
SOX3P41225 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC25.57■■□□□ 1.68
SOX3P41225 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SOX3P41225 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SOX3P41225 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC25.56■■□□□ 1.68
SOX3P41225 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SOX3P41225 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
SOX3P41225 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC25.53■■□□□ 1.68
SOX3P41225 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
SOX3P41225 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC25.51■■□□□ 1.67
SOX3P41225 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SOX3P41225 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
SOX3P41225 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SOX3P41225 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SOX3P41225 AL133380.1-201ENST00000506013 324 ntBASIC25.48■■□□□ 1.67
SOX3P41225 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC25.48■■□□□ 1.67
SOX3P41225 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
SOX3P41225 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SOX3P41225 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC25.47■■□□□ 1.67
SOX3P41225 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SOX3P41225 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC25.46■■□□□ 1.67
SOX3P41225 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
SOX3P41225 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.66
SOX3P41225 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SOX3P41225 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SOX3P41225 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SOX3P41225 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC25.41■■□□□ 1.66
SOX3P41225 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
SOX3P41225 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC25.4■■□□□ 1.66
SOX3P41225 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SOX3P41225 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.39■■□□□ 1.66
SOX3P41225 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
SOX3P41225 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms