Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 KIF2C-204ENST00000452259 1124 ntTSL 58.3□□□□□ -1.081e-13■■■■■ 63.4
SMNDC1O75940 KIF2C-208ENST00000493027 1091 ntTSL 57.24□□□□□ -1.251e-13■■■■■ 63.4
SMNDC1O75940 GAS5-229ENST00000458220 469 ntTSL 27.36□□□□□ -1.238e-39■■■■■ 62.1
SMNDC1O75940 GAS5-204ENST00000421068 1060 ntTSL 27.03□□□□□ -1.288e-39■■■■■ 62.1
SMNDC1O75940 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.112e-13■■■■■ 61
SMNDC1O75940 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.252e-13■■■■■ 61
SMNDC1O75940 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.322e-13■■■■■ 61
SMNDC1O75940 RERE-213ENST00000480342 2710 ntTSL 210.56□□□□□ -0.722e-13■■■■■ 61
SMNDC1O75940 RERE-203ENST00000400907 2973 ntTSL 5 BASIC8.56□□□□□ -1.042e-13■■■■■ 61
SMNDC1O75940 RERE-207ENST00000464972 743 ntTSL 57.42□□□□□ -1.222e-13■■■■■ 61
SMNDC1O75940 SNORD4B-201ENST00000459083 72 ntBASIC2.11□□□□□ -2.074e-75■■■■■ 60.7
SMNDC1O75940 RNU2-27P-201ENST00000516185 142 ntBASIC3.29□□□□□ -1.884e-15■■■■■ 60.6
SMNDC1O75940 RNU6-31P-201ENST00000384388 108 ntBASIC7.36□□□□□ -1.236e-30■■■■■ 60.5
SMNDC1O75940 PHB2-208ENST00000543465 1518 ntTSL 519.97■□□□□ 0.791e-70■■■■■ 59.8
SMNDC1O75940 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.51■□□□□ 0.551e-70■■■■■ 59.8
SMNDC1O75940 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.481e-70■■■■■ 59.8
SMNDC1O75940 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.311e-70■■■■■ 59.8
SMNDC1O75940 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.76■□□□□ 0.271e-70■■■■■ 59.8
SMNDC1O75940 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.51■□□□□ 0.231e-70■■■■■ 59.8
SMNDC1O75940 PHB2-205ENST00000537646 874 ntTSL 513.87□□□□□ -0.191e-70■■■■■ 59.8
SMNDC1O75940 SCARNA12-201ENST00000459155 270 ntBASIC12.49□□□□□ -0.411e-70■■■■■ 59.8
SMNDC1O75940 PHB2-212ENST00000545555 309 ntTSL 58.59□□□□□ -1.031e-70■■■■■ 59.8
SMNDC1O75940 EIF4A2-221ENST00000491473 579 ntTSL 26.43□□□□□ -1.382e-43■■■■■ 59.8
SMNDC1O75940 SNORD48-201ENST00000364953 64 ntBASIC1.84□□□□□ -2.119e-87■■■■■ 59.6
SMNDC1O75940 EIF4A2-215ENST00000467585 570 ntTSL 211.59□□□□□ -0.551e-42■■■■■ 59.3
SMNDC1O75940 EIF4A2-208ENST00000445596 600 ntTSL 211.4□□□□□ -0.581e-42■■■■■ 59.3
SMNDC1O75940 EIF4A2-227ENST00000498746 579 ntTSL 29.69□□□□□ -0.861e-42■■■■■ 59.3
SMNDC1O75940 EIF4A2-212ENST00000465267 1054 ntTSL 26.43□□□□□ -1.381e-42■■■■■ 59.3
SMNDC1O75940 EIF4A2-211ENST00000465222 676 ntTSL 25.76□□□□□ -1.491e-42■■■■■ 59.3
SMNDC1O75940 EIF4A2-224ENST00000495049 576 ntTSL 25.61□□□□□ -1.511e-42■■■■■ 59.3
SMNDC1O75940 EIF4A2-210ENST00000465032 578 ntTSL 25.61□□□□□ -1.511e-42■■■■■ 59.3
SMNDC1O75940 EIF4A2-220ENST00000486805 590 ntTSL 25.35□□□□□ -1.551e-42■■■■■ 59.3
SMNDC1O75940 SNORA78-201ENST00000459373 127 ntBASIC17.66■□□□□ 0.421e-19■■■■■ 59.2
SMNDC1O75940 SNHG9-202ENST00000564014 471 ntBASIC15.1■□□□□ 0.011e-19■■■■■ 59.2
SMNDC1O75940 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC13.4□□□□□ -0.261e-19■■■■■ 59.2
SMNDC1O75940 MCM7-204ENST00000425308 1497 ntTSL 325.01■■□□□ 1.599e-14■■■■■ 59.1
SMNDC1O75940 MCM7-209ENST00000485286 2900 ntTSL 219.64■□□□□ 0.739e-14■■■■■ 59.1
SMNDC1O75940 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.64■□□□□ 0.579e-14■■■■■ 59.1
SMNDC1O75940 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.95□□□□□ -0.029e-14■■■■■ 59.1
SMNDC1O75940 MCM7-213ENST00000621318 3084 ntTSL 1 (best) BASIC13.83□□□□□ -0.29e-14■■■■■ 59.1
SMNDC1O75940 MCM7-201ENST00000303887 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.359e-14■■■■■ 59.1
SMNDC1O75940 MCM7-205ENST00000463722 1327 ntTSL 511.77□□□□□ -0.539e-14■■■■■ 59.1
SMNDC1O75940 MCM7-210ENST00000489841 2515 ntTSL 1 (best)11.12□□□□□ -0.639e-14■■■■■ 59.1
SMNDC1O75940 MCM7-211ENST00000491245 648 ntTSL 1 (best)8.25□□□□□ -1.099e-14■■■■■ 59.1
SMNDC1O75940 TSPEAR-201ENST00000323084 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.272e-16■■■■■ 59
SMNDC1O75940 TSPEAR-203ENST00000613245 3524 ntTSL 1 (best) BASIC13.13□□□□□ -0.312e-16■■■■■ 59
SMNDC1O75940 TSPEAR-204ENST00000614657 4027 ntTSL 1 (best) BASIC12.58□□□□□ -0.42e-16■■■■■ 59
SMNDC1O75940 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.461e-25■■■■■ 57.2
SMNDC1O75940 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.291e-25■■■■■ 57.2
SMNDC1O75940 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.233e-13■■■■■ 57.2
SMNDC1O75940 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.171e-25■■■■■ 57.2
SMNDC1O75940 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.111e-25■■■■■ 57.2
SMNDC1O75940 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.081e-25■■■■■ 57.2
SMNDC1O75940 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.081e-25■■■■■ 57.2
SMNDC1O75940 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.511e-25■■■■■ 57.2
SMNDC1O75940 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC11.84□□□□□ -0.511e-25■■■■■ 57.2
SMNDC1O75940 C6orf48-201ENST00000375633 586 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.299e-87■■■■■ 57.2
SMNDC1O75940 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.85■■□□□ 1.092e-12■■■■■ 57.2
SMNDC1O75940 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.942e-12■■■■■ 57.2
SMNDC1O75940 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.422e-12■■■■■ 57.2
SMNDC1O75940 BAZ1A-204ENST00000553385 733 ntTSL 210.17□□□□□ -0.782e-12■■■■■ 57.2
SMNDC1O75940 BAZ1A-209ENST00000555273 729 ntTSL 29.76□□□□□ -0.852e-12■■■■■ 57.2
SMNDC1O75940 BAZ1A-211ENST00000556314 673 ntTSL 24.71□□□□□ -1.662e-12■■■■■ 57.2
SMNDC1O75940 KIFC3-213ENST00000563028 681 ntTSL 421.07■□□□□ 0.963e-16■■■■■ 56.6
SMNDC1O75940 KIFC3-223ENST00000565684 623 ntTSL 520.33■□□□□ 0.853e-16■■■■■ 56.6
SMNDC1O75940 RNU2-16P-201ENST00000410712 136 ntBASIC7.67□□□□□ -1.183e-16■■■■■ 56.6
SMNDC1O75940 RNU6-20P-201ENST00000384106 107 ntBASIC4.4□□□□□ -1.713e-16■■■■■ 56.6
SMNDC1O75940 EIF4A2-218ENST00000475653 909 ntTSL 25.68□□□□□ -1.51e-42■■■■■ 56.3
SMNDC1O75940 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.11■□□□□ 0.016e-30■■■■■ 55.8
SMNDC1O75940 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC12.09□□□□□ -0.476e-30■■■■■ 55.8
SMNDC1O75940 FAM238C-203ENST00000640121 3620 ntTSL 1 (best) BASIC11.05□□□□□ -0.646e-30■■■■■ 55.8
SMNDC1O75940 FAM238C-201ENST00000638416 868 ntTSL 2 BASIC10.21□□□□□ -0.776e-30■■■■■ 55.8
SMNDC1O75940 FAM238C-205ENST00000640641 391 ntBASIC7.95□□□□□ -1.146e-30■■■■■ 55.8
SMNDC1O75940 RIMKLB-201ENST00000299673 2033 ntTSL 1 (best)19.33■□□□□ 0.683e-16■■■■■ 55.6
SMNDC1O75940 RIMKLB-211ENST00000542232 640 ntTSL 313.17□□□□□ -0.33e-16■■■■■ 55.6
SMNDC1O75940 RIMKLB-213ENST00000619374 1519 ntTSL 5 BASIC11.91□□□□□ -0.53e-16■■■■■ 55.6
SMNDC1O75940 RIMKLB-212ENST00000544257 1589 ntTSL 1 (best)8.6□□□□□ -1.033e-16■■■■■ 55.6
SMNDC1O75940 RNU6-33P-201ENST00000384793 107 ntBASIC5.05□□□□□ -1.64e-46■■■■■ 55
SMNDC1O75940 SCARNA18.1-201ENST00000516330 83 ntBASIC5.37□□□□□ -1.554e-77■■■■■ 54.6
SMNDC1O75940 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.56□□□□□ -0.081e-10■■■■■ 54.5
SMNDC1O75940 RNF24-202ENST00000358395 3242 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.371e-10■■■■■ 54.5
SMNDC1O75940 RNF24-201ENST00000336095 7453 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41e-10■■■■■ 54.5
SMNDC1O75940 RNF24-203ENST00000432261 3149 ntTSL 5 BASIC9□□□□□ -0.971e-10■■■■■ 54.5
SMNDC1O75940 TACC3-205ENST00000467746 966 ntTSL 314.93□□□□□ -0.022e-6■■■■■ 54.4
SMNDC1O75940 TACC3-211ENST00000493975 825 ntTSL 313.07□□□□□ -0.322e-6■■■■■ 54.4
SMNDC1O75940 TACC3-203ENST00000458173 778 ntTSL 512.26□□□□□ -0.452e-6■■■■■ 54.4
SMNDC1O75940 TACC3-210ENST00000485989 726 ntTSL 311.51□□□□□ -0.572e-6■■■■■ 54.4
SMNDC1O75940 PUM1-208ENST00000471894 812 ntTSL 39.35□□□□□ -0.911e-63■■■■■ 53.6
SMNDC1O75940 PUM1-210ENST00000490546 707 ntTSL 49.16□□□□□ -0.941e-63■■■■■ 53.6
SMNDC1O75940 PUM1-223ENST00000532678 793 ntTSL 48.07□□□□□ -1.121e-63■■■■■ 53.6
SMNDC1O75940 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.142e-12■■■■■ 53.4
SMNDC1O75940 XPO5-206ENST00000455285 758 ntTSL 39.5□□□□□ -0.892e-12■■■■■ 53.4
SMNDC1O75940 XPO5-208ENST00000486936 601 ntTSL 38.4□□□□□ -1.062e-12■■■■■ 53.4
SMNDC1O75940 XPO5-203ENST00000398835 868 ntTSL 58.1□□□□□ -1.112e-12■■■■■ 53.4
SMNDC1O75940 XPO5-205ENST00000450462 633 ntTSL 47.93□□□□□ -1.142e-12■■■■■ 53.4
SMNDC1O75940 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.145e-75■■■■■ 53.1
SMNDC1O75940 WDR74-208ENST00000538098 548 ntTSL 415.77■□□□□ 0.125e-75■■■■■ 53.1
SMNDC1O75940 RNU2-2P-201ENST00000410396 191 ntBASIC4.17□□□□□ -1.745e-75■■■■■ 53.1
SMNDC1O75940 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.044e-11■■■■■ 53.1
SMNDC1O75940 CDK5RAP2-212ENST00000480112 5826 ntTSL 1 (best)13.1□□□□□ -0.314e-11■■■■■ 53.1
Retrieved 100 of 11,362 protein–RNA pairs in 53.3 ms