Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC27.42■■□□□ 1.98
TRIM13O60858 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
TRIM13O60858 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
TRIM13O60858 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
TRIM13O60858 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
TRIM13O60858 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
TRIM13O60858 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC27.37■■□□□ 1.97
TRIM13O60858 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC27.36■■□□□ 1.97
TRIM13O60858 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
TRIM13O60858 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
TRIM13O60858 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC27.34■■□□□ 1.97
TRIM13O60858 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
TRIM13O60858 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC27.32■■□□□ 1.96
TRIM13O60858 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
TRIM13O60858 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
TRIM13O60858 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC27.31■■□□□ 1.96
TRIM13O60858 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC27.3■■□□□ 1.96
TRIM13O60858 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC27.29■■□□□ 1.96
TRIM13O60858 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
TRIM13O60858 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC27.27■■□□□ 1.96
TRIM13O60858 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
TRIM13O60858 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
TRIM13O60858 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC27.25■■□□□ 1.95
TRIM13O60858 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC27.23■■□□□ 1.95
TRIM13O60858 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC27.23■■□□□ 1.95
TRIM13O60858 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
TRIM13O60858 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
TRIM13O60858 AC120057.4-201ENST00000624722 1615 ntBASIC27.21■■□□□ 1.95
TRIM13O60858 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
TRIM13O60858 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC27.18■■□□□ 1.94
TRIM13O60858 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
TRIM13O60858 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
TRIM13O60858 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
TRIM13O60858 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
TRIM13O60858 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
TRIM13O60858 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
TRIM13O60858 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC27.12■■□□□ 1.93
TRIM13O60858 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
TRIM13O60858 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
TRIM13O60858 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
TRIM13O60858 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
TRIM13O60858 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC27.1■■□□□ 1.93
TRIM13O60858 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC27.08■■□□□ 1.93
TRIM13O60858 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
TRIM13O60858 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC27.07■■□□□ 1.92
TRIM13O60858 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
TRIM13O60858 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
TRIM13O60858 AC006077.2-201ENST00000623591 457 ntBASIC27.04■■□□□ 1.92
TRIM13O60858 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
TRIM13O60858 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
TRIM13O60858 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
TRIM13O60858 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
TRIM13O60858 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
TRIM13O60858 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC27.01■■□□□ 1.92
TRIM13O60858 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC27.01■■□□□ 1.91
TRIM13O60858 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
TRIM13O60858 ABCB10P1-201ENST00000614297 2181 ntBASIC27.01■■□□□ 1.91
TRIM13O60858 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
TRIM13O60858 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
TRIM13O60858 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC27■■□□□ 1.91
TRIM13O60858 MVK-208ENST00000539696 608 ntTSL 5 BASIC26.98■■□□□ 1.91
TRIM13O60858 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.97■■□□□ 1.91
TRIM13O60858 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
TRIM13O60858 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC26.96■■□□□ 1.91
TRIM13O60858 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC26.95■■□□□ 1.9
TRIM13O60858 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.92■■□□□ 1.9
TRIM13O60858 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.92■■□□□ 1.9
TRIM13O60858 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC26.92■■□□□ 1.9
TRIM13O60858 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
TRIM13O60858 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
TRIM13O60858 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC26.91■■□□□ 1.9
TRIM13O60858 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
TRIM13O60858 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
TRIM13O60858 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.9
TRIM13O60858 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.89
TRIM13O60858 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
TRIM13O60858 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
TRIM13O60858 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.88■■□□□ 1.89
TRIM13O60858 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
TRIM13O60858 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.88■■□□□ 1.89
TRIM13O60858 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC26.87■■□□□ 1.89
TRIM13O60858 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
TRIM13O60858 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
TRIM13O60858 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
TRIM13O60858 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
TRIM13O60858 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
TRIM13O60858 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26.81■■□□□ 1.88
TRIM13O60858 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC26.81■■□□□ 1.88
TRIM13O60858 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
TRIM13O60858 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
TRIM13O60858 ABCB10P3-201ENST00000561950 2166 ntBASIC26.78■■□□□ 1.88
TRIM13O60858 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC26.78■■□□□ 1.88
TRIM13O60858 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.78■■□□□ 1.88
TRIM13O60858 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
TRIM13O60858 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
TRIM13O60858 ZNRF2P1-201ENST00000441407 443 ntBASIC26.77■■□□□ 1.88
TRIM13O60858 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
TRIM13O60858 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
TRIM13O60858 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
TRIM13O60858 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms