Protein–RNA interactions for Protein: A0A140T963

RNF103-CHMP3, RNF103-CHMP3 readthrough (Fragment), humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF103-CHMP3A0A140T963 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
RNF103-CHMP3A0A140T963 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
RNF103-CHMP3A0A140T963 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
RNF103-CHMP3A0A140T963 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
RNF103-CHMP3A0A140T963 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.48■■□□□ 1.83
RNF103-CHMP3A0A140T963 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
RNF103-CHMP3A0A140T963 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.45■■□□□ 1.83
RNF103-CHMP3A0A140T963 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
RNF103-CHMP3A0A140T963 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
RNF103-CHMP3A0A140T963 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
RNF103-CHMP3A0A140T963 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RNF103-CHMP3A0A140T963 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC26.42■■□□□ 1.82
RNF103-CHMP3A0A140T963 ZNRF2P1-201ENST00000441407 443 ntBASIC26.42■■□□□ 1.82
RNF103-CHMP3A0A140T963 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
RNF103-CHMP3A0A140T963 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC26.4■■□□□ 1.82
RNF103-CHMP3A0A140T963 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
RNF103-CHMP3A0A140T963 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RNF103-CHMP3A0A140T963 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
RNF103-CHMP3A0A140T963 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.35■■□□□ 1.81
RNF103-CHMP3A0A140T963 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC26.35■■□□□ 1.81
RNF103-CHMP3A0A140T963 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
RNF103-CHMP3A0A140T963 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
RNF103-CHMP3A0A140T963 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
RNF103-CHMP3A0A140T963 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
RNF103-CHMP3A0A140T963 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
RNF103-CHMP3A0A140T963 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
RNF103-CHMP3A0A140T963 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RNF103-CHMP3A0A140T963 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
RNF103-CHMP3A0A140T963 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC26.32■■□□□ 1.8
RNF103-CHMP3A0A140T963 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
RNF103-CHMP3A0A140T963 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC26.29■■□□□ 1.8
RNF103-CHMP3A0A140T963 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
RNF103-CHMP3A0A140T963 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
RNF103-CHMP3A0A140T963 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC26.28■■□□□ 1.8
RNF103-CHMP3A0A140T963 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC26.28■■□□□ 1.8
RNF103-CHMP3A0A140T963 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RNF103-CHMP3A0A140T963 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC26.26■■□□□ 1.79
RNF103-CHMP3A0A140T963 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RNF103-CHMP3A0A140T963 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC26.25■■□□□ 1.79
RNF103-CHMP3A0A140T963 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
RNF103-CHMP3A0A140T963 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
RNF103-CHMP3A0A140T963 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
RNF103-CHMP3A0A140T963 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF103-CHMP3A0A140T963 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RNF103-CHMP3A0A140T963 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RNF103-CHMP3A0A140T963 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RNF103-CHMP3A0A140T963 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
RNF103-CHMP3A0A140T963 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.21■■□□□ 1.79
RNF103-CHMP3A0A140T963 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
RNF103-CHMP3A0A140T963 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
RNF103-CHMP3A0A140T963 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC26.18■■□□□ 1.78
RNF103-CHMP3A0A140T963 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
RNF103-CHMP3A0A140T963 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RNF103-CHMP3A0A140T963 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
RNF103-CHMP3A0A140T963 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
RNF103-CHMP3A0A140T963 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
RNF103-CHMP3A0A140T963 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC26.15■■□□□ 1.78
RNF103-CHMP3A0A140T963 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
RNF103-CHMP3A0A140T963 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
RNF103-CHMP3A0A140T963 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
RNF103-CHMP3A0A140T963 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
RNF103-CHMP3A0A140T963 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
RNF103-CHMP3A0A140T963 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
RNF103-CHMP3A0A140T963 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26.11■■□□□ 1.77
RNF103-CHMP3A0A140T963 MVK-208ENST00000539696 608 ntTSL 5 BASIC26.11■■□□□ 1.77
RNF103-CHMP3A0A140T963 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.09■■□□□ 1.77
RNF103-CHMP3A0A140T963 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.08■■□□□ 1.77
RNF103-CHMP3A0A140T963 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.08■■□□□ 1.77
RNF103-CHMP3A0A140T963 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.08■■□□□ 1.76
RNF103-CHMP3A0A140T963 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.76
RNF103-CHMP3A0A140T963 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
RNF103-CHMP3A0A140T963 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
RNF103-CHMP3A0A140T963 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
RNF103-CHMP3A0A140T963 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
RNF103-CHMP3A0A140T963 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
RNF103-CHMP3A0A140T963 ABCB10P1-201ENST00000614297 2181 ntBASIC26.05■■□□□ 1.76
RNF103-CHMP3A0A140T963 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RNF103-CHMP3A0A140T963 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
RNF103-CHMP3A0A140T963 DYNLL1-208ENST00000550178 581 ntBASIC26.02■■□□□ 1.76
RNF103-CHMP3A0A140T963 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
RNF103-CHMP3A0A140T963 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.01■■□□□ 1.75
RNF103-CHMP3A0A140T963 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
RNF103-CHMP3A0A140T963 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26■■□□□ 1.75
RNF103-CHMP3A0A140T963 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
RNF103-CHMP3A0A140T963 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
RNF103-CHMP3A0A140T963 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
RNF103-CHMP3A0A140T963 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
RNF103-CHMP3A0A140T963 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
RNF103-CHMP3A0A140T963 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
RNF103-CHMP3A0A140T963 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
RNF103-CHMP3A0A140T963 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
RNF103-CHMP3A0A140T963 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC25.95■■□□□ 1.74
RNF103-CHMP3A0A140T963 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC25.94■■□□□ 1.74
RNF103-CHMP3A0A140T963 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
RNF103-CHMP3A0A140T963 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
RNF103-CHMP3A0A140T963 AC120057.4-201ENST00000624722 1615 ntBASIC25.92■■□□□ 1.74
RNF103-CHMP3A0A140T963 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
RNF103-CHMP3A0A140T963 ABCB10P3-201ENST00000561950 2166 ntBASIC25.92■■□□□ 1.74
RNF103-CHMP3A0A140T963 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
RNF103-CHMP3A0A140T963 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC25.91■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms