Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
BDNFP23560 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
BDNFP23560 STX3-207ENST00000633708 3111 ntTSL 5 BASIC14.7□□□□□ -0.06
BDNFP23560 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.7□□□□□ -0.06
BDNFP23560 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
BDNFP23560 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
BDNFP23560 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
BDNFP23560 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC14.69□□□□□ -0.06
BDNFP23560 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
BDNFP23560 AC011474.4-201ENST00000623523 2076 ntBASIC14.69□□□□□ -0.06
BDNFP23560 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC14.69□□□□□ -0.06
BDNFP23560 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
BDNFP23560 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
BDNFP23560 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
BDNFP23560 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC14.69□□□□□ -0.06
BDNFP23560 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC14.69□□□□□ -0.06
BDNFP23560 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC14.69□□□□□ -0.06
BDNFP23560 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
BDNFP23560 EEF1GP8-201ENST00000506566 1154 ntBASIC14.69□□□□□ -0.06
BDNFP23560 AC100858.1-201ENST00000514059 1228 ntBASIC14.69□□□□□ -0.06
BDNFP23560 VENTXP3-201ENST00000546480 773 ntBASIC14.69□□□□□ -0.06
BDNFP23560 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
BDNFP23560 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC14.69□□□□□ -0.06
BDNFP23560 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC14.69□□□□□ -0.06
BDNFP23560 NT5C-204ENST00000578337 582 ntTSL 2 BASIC14.69□□□□□ -0.06
BDNFP23560 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC14.69□□□□□ -0.06
BDNFP23560 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC14.69□□□□□ -0.06
BDNFP23560 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC14.69□□□□□ -0.06
BDNFP23560 GMFG-209ENST00000600322 622 ntTSL 5 BASIC14.69□□□□□ -0.06
BDNFP23560 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
BDNFP23560 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
BDNFP23560 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
BDNFP23560 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
BDNFP23560 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.69□□□□□ -0.06
BDNFP23560 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC14.69□□□□□ -0.06
BDNFP23560 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.69□□□□□ -0.06
BDNFP23560 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC14.69□□□□□ -0.06
BDNFP23560 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
BDNFP23560 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.68□□□□□ -0.06
BDNFP23560 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
BDNFP23560 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
BDNFP23560 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC14.68□□□□□ -0.06
BDNFP23560 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC14.68□□□□□ -0.06
BDNFP23560 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC14.68□□□□□ -0.06
BDNFP23560 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 IGHV3-37-201ENST00000518544 340 ntBASIC14.68□□□□□ -0.06
BDNFP23560 BATF-202ENST00000555504 361 ntTSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC14.68□□□□□ -0.06
BDNFP23560 MIR4750-201ENST00000584564 56 ntBASIC14.68□□□□□ -0.06
BDNFP23560 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
BDNFP23560 AC002044.2-201ENST00000624910 970 ntBASIC14.68□□□□□ -0.06
BDNFP23560 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms