Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
USP39Q53GS9 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.23□□□□□ -0.13
USP39Q53GS9 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
USP39Q53GS9 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.23□□□□□ -0.13
USP39Q53GS9 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
USP39Q53GS9 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.23□□□□□ -0.13
USP39Q53GS9 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC14.23□□□□□ -0.13
USP39Q53GS9 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.23□□□□□ -0.13
USP39Q53GS9 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
USP39Q53GS9 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC14.22□□□□□ -0.13
USP39Q53GS9 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.22□□□□□ -0.13
USP39Q53GS9 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
USP39Q53GS9 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.22□□□□□ -0.13
USP39Q53GS9 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
USP39Q53GS9 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
USP39Q53GS9 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.22□□□□□ -0.13
USP39Q53GS9 COX20P1-201ENST00000366529 357 ntBASIC14.22□□□□□ -0.13
USP39Q53GS9 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
USP39Q53GS9 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC14.22□□□□□ -0.13
USP39Q53GS9 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
USP39Q53GS9 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC14.22□□□□□ -0.13
USP39Q53GS9 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 VENTXP4-201ENST00000449029 958 ntBASIC14.22□□□□□ -0.13
USP39Q53GS9 AC244197.1-201ENST00000456494 951 ntBASIC14.22□□□□□ -0.13
USP39Q53GS9 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 RN7SL582P-201ENST00000491078 279 ntBASIC14.22□□□□□ -0.13
USP39Q53GS9 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC14.22□□□□□ -0.13
USP39Q53GS9 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.22□□□□□ -0.13
USP39Q53GS9 GOLGA2P7-209ENST00000560408 745 ntBASIC14.22□□□□□ -0.13
USP39Q53GS9 AL118516.1-201ENST00000564152 670 ntBASIC14.22□□□□□ -0.13
USP39Q53GS9 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC14.22□□□□□ -0.13
USP39Q53GS9 AC006483.2-201ENST00000609813 515 ntBASIC14.22□□□□□ -0.13
USP39Q53GS9 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
USP39Q53GS9 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
USP39Q53GS9 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
USP39Q53GS9 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.22□□□□□ -0.13
USP39Q53GS9 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.22□□□□□ -0.13
USP39Q53GS9 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
USP39Q53GS9 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC14.22□□□□□ -0.13
USP39Q53GS9 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.22□□□□□ -0.13
USP39Q53GS9 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
USP39Q53GS9 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.22□□□□□ -0.13
USP39Q53GS9 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
USP39Q53GS9 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 AL672207.1-201ENST00000328462 1570 ntBASIC14.22□□□□□ -0.13
USP39Q53GS9 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP39Q53GS9 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
USP39Q53GS9 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.21□□□□□ -0.13
USP39Q53GS9 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
USP39Q53GS9 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
USP39Q53GS9 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.21□□□□□ -0.13
USP39Q53GS9 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.21□□□□□ -0.13
USP39Q53GS9 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
USP39Q53GS9 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC14.21□□□□□ -0.13
USP39Q53GS9 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.21□□□□□ -0.13
USP39Q53GS9 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
USP39Q53GS9 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms