Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 API5-208ENST00000531273 1868 ntTSL 2 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC13.54□□□□□ -0.24
COL28A1Q2UY09 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 AC010900.1-201ENST00000449849 1296 ntBASIC13.54□□□□□ -0.24
COL28A1Q2UY09 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 RN7SL530P-201ENST00000485097 298 ntBASIC13.54□□□□□ -0.24
COL28A1Q2UY09 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 AC092612.1-201ENST00000514501 998 ntBASIC13.54□□□□□ -0.24
COL28A1Q2UY09 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 AC020931.1-201ENST00000589622 1346 ntBASIC13.54□□□□□ -0.24
COL28A1Q2UY09 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL28A1Q2UY09 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.53□□□□□ -0.24
COL28A1Q2UY09 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL28A1Q2UY09 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms