RNA–Protein interactions for RNA: ENST00000509330.5

PHF3-209, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best) BASIC

Gene PHF3, Length 2,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-209ENST00000509330 NISCHQ9Y2I1 1504 aa32.38■■■□□ 2.77
PHF3-209ENST00000509330 CCDC180Q9P1Z9 1646 aa27.74■■■□□ 2.03
PHF3-209ENST00000509330 SHROOM4Q9ULL8 1493 aa27.41■■□□□ 1.98
PHF3-209ENST00000509330 DCAF8L2P0C7V8 631 aa27.38■■□□□ 1.97
PHF3-209ENST00000509330 ZCCHC6Q5VYS8 1495 aaKnown RBP27.24■■□□□ 1.95
PHF3-209ENST00000509330 SUPT5HO00267 1087 aaKnown RBP26.55■■□□□ 1.84
PHF3-209ENST00000509330 ABCC9O60706 1549 aa26.54■■□□□ 1.84
PHF3-209ENST00000509330 DCAF1Q9Y4B6 1507 aa26.44■■□□□ 1.82
PHF3-209ENST00000509330 SCRIBQ14160 1630 aa26.1■■□□□ 1.77
PHF3-209ENST00000509330 MYO15BQ96JP2 1530 aa25.9■■□□□ 1.74
PHF3-209ENST00000509330 NACADO15069 1562 aa25.85■■□□□ 1.73
PHF3-209ENST00000509330 RB1CC1Q8TDY2 1594 aa25.62■■□□□ 1.69
PHF3-209ENST00000509330 RSF1Q96T23 1441 aaPredicted RBP25.41■■□□□ 1.66
PHF3-209ENST00000509330 CECR2Q9BXF3 1484 aa25.4■■□□□ 1.66
PHF3-209ENST00000509330 CHIC1Q5VXU3 224 aa25.34■■□□□ 1.65
PHF3-209ENST00000509330 PABPN1Q86U42 306 aaKnown RBP eCLIP25.31■■□□□ 1.64
PHF3-209ENST00000509330 MROH2BQ7Z745 1585 aa25.2■■□□□ 1.62
PHF3-209ENST00000509330 UNC13AQ9UPW8 1703 aa25.18■■□□□ 1.62
PHF3-209ENST00000509330 WIZO95785 1651 aa25.03■■□□□ 1.6
PHF3-209ENST00000509330 BICRAQ9NZM4 1560 aa24.93■■□□□ 1.58
PHF3-209ENST00000509330 BAZ1AQ9NRL2 1556 aaPredicted RBP24.92■■□□□ 1.58
PHF3-209ENST00000509330 SMARCA4P51532 1647 aa24.8■■□□□ 1.56
PHF3-209ENST00000509330 TRIM41Q8WV44 630 aa24.7■■□□□ 1.54
PHF3-209ENST00000509330 LOC105371045A0A1W2PR82 267 aa24.67■■□□□ 1.54
PHF3-209ENST00000509330 FAM9AQ8IZU1 332 aaPredicted RBP24.61■■□□□ 1.53
PHF3-209ENST00000509330 TOP2AP11388 1531 aaKnown RBP24.57■■□□□ 1.52
PHF3-209ENST00000509330 EHMT2Q96KQ7 1210 aa24.54■■□□□ 1.52
PHF3-209ENST00000509330 CCDC88BA6NC98 1476 aa24.51■■□□□ 1.51
PHF3-209ENST00000509330 SMARCA2P51531 1590 aa24.43■■□□□ 1.5
PHF3-209ENST00000509330 ATAD2BQ9ULI0 1458 aa24.36■■□□□ 1.49
PHF3-209ENST00000509330 ABCC8Q09428 1581 aa24.3■■□□□ 1.48
PHF3-209ENST00000509330 BAZ1BQ9UIG0 1483 aaKnown RBP24.29■■□□□ 1.48
PHF3-209ENST00000509330 EIF4G1Q04637 1599 aaKnown RBP24.27■■□□□ 1.48
PHF3-209ENST00000509330 PEG3Q9GZU2 1588 aa24.26■■□□□ 1.47
PHF3-209ENST00000509330 PCGF6Q9BYE7 350 aa23.98■■□□□ 1.43
PHF3-209ENST00000509330 NCAPD3P42695 1498 aa23.95■■□□□ 1.42
PHF3-209ENST00000509330 SOGA1O94964 1423 aa23.93■■□□□ 1.42
PHF3-209ENST00000509330 WRNQ14191 1432 aaPredicted RBP eCLIP23.92■■□□□ 1.42
PHF3-209ENST00000509330 HMGXB3Q12766 1538 aa23.86■■□□□ 1.41
PHF3-209ENST00000509330 RUSC2Q8N2Y8 1516 aa23.86■■□□□ 1.41
PHF3-209ENST00000509330 SYNJ1O43426 1573 aa23.81■■□□□ 1.4
PHF3-209ENST00000509330 CC2D2AQ9P2K1 1620 aa23.79■■□□□ 1.4
PHF3-209ENST00000509330 PPARGC1BQ86YN6 1023 aaKnown RBP23.73■■□□□ 1.39
PHF3-209ENST00000509330 CSRNP3Q8WYN3 585 aa23.71■■□□□ 1.39
PHF3-209ENST00000509330 UBTFP17480 764 aaKnown RBP23.67■■□□□ 1.38
PHF3-209ENST00000509330 CFTRP13569 1480 aa23.59■■□□□ 1.37
PHF3-209ENST00000509330 DNAJC5BQ9UF47 199 aa23.56■■□□□ 1.36
PHF3-209ENST00000509330 RANGAP1P46060 587 aaPredicted RBP23.55■■□□□ 1.36
PHF3-209ENST00000509330 TTBK1Q5TCY1 1321 aaPredicted RBP23.54■■□□□ 1.36
PHF3-209ENST00000509330 TRIM26Q12899 539 aaPredicted RBP23.54■■□□□ 1.36
PHF3-209ENST00000509330 EEA1Q15075 1411 aa23.53■■□□□ 1.36
PHF3-209ENST00000509330 CADPSQ9ULU8 1353 aa23.51■■□□□ 1.35
PHF3-209ENST00000509330 TOP2BQ02880 1626 aa23.5■■□□□ 1.35
PHF3-209ENST00000509330 CUX1P39880 1505 aa23.49■■□□□ 1.35
PHF3-209ENST00000509330 CEP162Q5TB80 1403 aa23.47■■□□□ 1.35
PHF3-209ENST00000509330 GOLGA3Q08378 1498 aa23.43■■□□□ 1.34
PHF3-209ENST00000509330 NESP48681 1621 aa23.42■■□□□ 1.34
PHF3-209ENST00000509330 TNIKQ9UKE5 1360 aa23.41■■□□□ 1.34
PHF3-209ENST00000509330 BIVM-ERCC5R4GMW8 1640 aa23.39■■□□□ 1.34
PHF3-209ENST00000509330 HRCP23327 699 aa23.36■■□□□ 1.33
PHF3-209ENST00000509330 RAPGEF2Q9Y4G8 1499 aa23.36■■□□□ 1.33
PHF3-209ENST00000509330 CEP164Q9UPV0 1460 aa23.35■■□□□ 1.33
PHF3-209ENST00000509330 FANCD2Q9BXW9 1451 aa23.31■■□□□ 1.32
PHF3-209ENST00000509330 PRDM2Q13029 1718 aa23.24■■□□□ 1.31
PHF3-209ENST00000509330 KIF21BO75037 1637 aa23.24■■□□□ 1.31
PHF3-209ENST00000509330 KIF27Q86VH2 1401 aa23.23■■□□□ 1.31
PHF3-209ENST00000509330 FGD5Q6ZNL6 1462 aa23.21■■□□□ 1.31
PHF3-209ENST00000509330 CUX2O14529 1486 aa23.21■■□□□ 1.31
PHF3-209ENST00000509330 CLIP1P30622 1438 aa23.19■■□□□ 1.3
PHF3-209ENST00000509330 PRXQ9BXM0 1461 aa23.11■■□□□ 1.29
PHF3-209ENST00000509330 RAD54L2Q9Y4B4 1467 aa23.11■■□□□ 1.29
PHF3-209ENST00000509330 TOPBP1Q92547 1522 aa23.05■■□□□ 1.28
PHF3-209ENST00000509330 IGF1RP08069 1367 aa23.04■■□□□ 1.28
PHF3-209ENST00000509330 LAMC3Q9Y6N6 1575 aa23.03■■□□□ 1.28
PHF3-209ENST00000509330 POLA1P09884 1462 aaPredicted RBP23.02■■□□□ 1.28
PHF3-209ENST00000509330 DNMBPQ6XZF7 1577 aa23.01■■□□□ 1.27
PHF3-209ENST00000509330 URB2Q14146 1524 aaKnown RBP22.99■■□□□ 1.27
PHF3-209ENST00000509330 ERICH3Q5RHP9 1530 aa22.99■■□□□ 1.27
PHF3-209ENST00000509330 PDS5BQ9NTI5 1447 aa22.97■■□□□ 1.27
PHF3-209ENST00000509330 CARMIL1Q5VZK9 1371 aa22.96■■□□□ 1.27
PHF3-209ENST00000509330 APLP2Q06481 763 aa22.95■■□□□ 1.27
PHF3-209ENST00000509330 VPS8Q8N3P4 1428 aa22.95■■□□□ 1.26
PHF3-209ENST00000509330 TDRD9Q8NDG6 1382 aaKnown RBP22.91■■□□□ 1.26
PHF3-209ENST00000509330 KIF21AQ7Z4S6 1674 aa22.91■■□□□ 1.26
PHF3-209ENST00000509330 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.9■■□□□ 1.26
PHF3-209ENST00000509330 P3H3Q8IVL6 736 aa22.86■■□□□ 1.25
PHF3-209ENST00000509330 ARAP1Q96P48 1450 aa22.85■■□□□ 1.25
PHF3-209ENST00000509330 ABCA10Q8WWZ4 1543 aa22.85■■□□□ 1.25
PHF3-209ENST00000509330 ARHGAP35Q9NRY4 1499 aa22.78■■□□□ 1.24
PHF3-209ENST00000509330 HNRNPUL2Q1KMD3 747 aaKnown RBP22.78■■□□□ 1.24
PHF3-209ENST00000509330 CCER1Q8TC90 406 aaPredicted RBP22.76■■□□□ 1.23
PHF3-209ENST00000509330 KANK4Q5T7N3 995 aaPredicted RBP22.75■■□□□ 1.23
PHF3-209ENST00000509330 ATP1B4Q9UN42 357 aaPredicted RBP22.74■■□□□ 1.23
PHF3-209ENST00000509330 GAPVD1Q14C86 1478 aa22.69■■□□□ 1.22
PHF3-209ENST00000509330 AQRO60306 1485 aaKnown RBP eCLIP22.65■■□□□ 1.22
PHF3-209ENST00000509330 MRC2Q9UBG0 1479 aa22.65■■□□□ 1.22
PHF3-209ENST00000509330 ERCC6Q03468 1493 aa22.64■■□□□ 1.21
PHF3-209ENST00000509330 WDR97A6NE52 1622 aa22.63■■□□□ 1.21
PHF3-209ENST00000509330 ZEB1P37275 1124 aaPredicted RBP22.63■■□□□ 1.21
PHF3-209ENST00000509330 FHOD3Q2V2M9 1422 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 347 ms