Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC12.72□□□□□ -0.37
FREM3P0C091 MIR497HG-202ENST00000572453 3838 ntBASIC12.72□□□□□ -0.37
FREM3P0C091 AC007952.4-201ENST00000573866 637 ntBASIC12.72□□□□□ -0.37
FREM3P0C091 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC12.72□□□□□ -0.37
FREM3P0C091 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC12.72□□□□□ -0.37
FREM3P0C091 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
FREM3P0C091 AC011491.1-203ENST00000637688 543 ntBASIC12.72□□□□□ -0.37
FREM3P0C091 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 PDXDC2P-206ENST00000534700 1315 ntBASIC12.72□□□□□ -0.37
FREM3P0C091 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC12.72□□□□□ -0.37
FREM3P0C091 MSANTD2P1-201ENST00000445341 1368 ntBASIC12.72□□□□□ -0.37
FREM3P0C091 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
FREM3P0C091 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC12.72□□□□□ -0.37
FREM3P0C091 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
FREM3P0C091 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC12.72□□□□□ -0.37
FREM3P0C091 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
FREM3P0C091 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 USP39-207ENST00000450066 2086 ntTSL 2 BASIC12.72□□□□□ -0.37
FREM3P0C091 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
FREM3P0C091 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC12.72□□□□□ -0.37
FREM3P0C091 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC12.72□□□□□ -0.37
FREM3P0C091 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC12.71□□□□□ -0.37
FREM3P0C091 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
FREM3P0C091 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
FREM3P0C091 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
FREM3P0C091 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 AC004837.1-201ENST00000446267 564 ntBASIC12.71□□□□□ -0.37
FREM3P0C091 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
FREM3P0C091 CHCHD2P2-201ENST00000503744 321 ntBASIC12.71□□□□□ -0.37
FREM3P0C091 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC12.71□□□□□ -0.37
FREM3P0C091 TRMT112P3-201ENST00000580149 358 ntBASIC12.71□□□□□ -0.37
FREM3P0C091 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC12.71□□□□□ -0.37
FREM3P0C091 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 MIR7845-201ENST00000618396 99 ntBASIC12.71□□□□□ -0.37
FREM3P0C091 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC12.71□□□□□ -0.37
FREM3P0C091 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
FREM3P0C091 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
FREM3P0C091 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
FREM3P0C091 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
FREM3P0C091 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC12.71□□□□□ -0.37
FREM3P0C091 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC12.71□□□□□ -0.37
FREM3P0C091 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FREM3P0C091 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC12.71□□□□□ -0.38
FREM3P0C091 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
FREM3P0C091 RN7SKP109-201ENST00000410592 316 ntBASIC12.71□□□□□ -0.38
FREM3P0C091 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC12.71□□□□□ -0.38
FREM3P0C091 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC12.71□□□□□ -0.38
FREM3P0C091 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC12.71□□□□□ -0.38
FREM3P0C091 IGHV1-12-201ENST00000518307 205 ntBASIC12.71□□□□□ -0.38
FREM3P0C091 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC12.71□□□□□ -0.38
FREM3P0C091 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
FREM3P0C091 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
FREM3P0C091 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC12.71□□□□□ -0.38
FREM3P0C091 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC12.71□□□□□ -0.38
FREM3P0C091 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
FREM3P0C091 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.71□□□□□ -0.38
FREM3P0C091 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
FREM3P0C091 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
FREM3P0C091 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
FREM3P0C091 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
FREM3P0C091 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
FREM3P0C091 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
FREM3P0C091 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
FREM3P0C091 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
FREM3P0C091 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
FREM3P0C091 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC12.71□□□□□ -0.38
FREM3P0C091 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
FREM3P0C091 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
FREM3P0C091 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
FREM3P0C091 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms