Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 KRT8P43-201ENST00000406052 1458 ntBASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 ZNF318-201ENST00000361428 8006 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 ACTG1P19-201ENST00000418987 1116 ntBASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 NAA40-205ENST00000539656 577 ntTSL 4 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 HPX-213ENST00000615166 826 ntTSL 5 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 AC140479.7-201ENST00000636301 2332 ntBASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CTDP1Q9Y5B0 NLRC3-202ENST00000359128 6401 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 PAX7-203ENST00000420770 5538 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 AC012617.1-204ENST00000586340 2305 ntBASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 PTPRVP-205ENST00000641549 5067 ntBASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 AC138761.6-201ENST00000583997 1423 ntBASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 AC092573.1-201ENST00000433054 884 ntBASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 ALG1L6P-201ENST00000515248 758 ntBASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 MSANTD2P1-201ENST00000445341 1368 ntBASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CTDP1Q9Y5B0 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 PDXDC2P-206ENST00000534700 1315 ntBASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CTDP1Q9Y5B0 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms