Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 OTOF-203ENST00000339598 4756 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 PCDHGA8-202ENST00000610569 6480 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 ZNF142-205ENST00000449707 5909 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 ROBO2-209ENST00000487694 5919 ntTSL 5 BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 OPA3-201ENST00000263275 7828 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
KCNIP3Q9Y2W7 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 AP000593.2-201ENST00000542775 1433 ntBASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 TMEM56-201ENST00000370203 6822 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 JDP2-203ENST00000435893 5401 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 NBN-201ENST00000265433 4666 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 SPDYE19P-201ENST00000338590 713 ntBASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 VMA21-202ENST00000370361 693 ntTSL 5 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 AP001063.1-201ENST00000568332 529 ntBASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 AL358781.1-202ENST00000321081 1360 ntBASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 PLEKHG3-201ENST00000247226 10351 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 NEDD4L-208ENST00000456173 4978 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 PCDHGA9-201ENST00000573521 4605 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 FLNA-202ENST00000360319 8281 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 GHET1-201ENST00000627071 1906 ntBASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 SEC14L1-204ENST00000436233 5295 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 AL590824.1-201ENST00000403828 1349 ntBASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC11.86□□□□□ -0.51
KCNIP3Q9Y2W7 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 AC005014.1-201ENST00000432006 2976 ntBASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 LAMA4-207ENST00000424408 5983 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 LINC01544-201ENST00000567801 5168 ntTSL 2 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 C9orf106-201ENST00000316786 3145 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 MESD-201ENST00000261758 4264 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 SNHG14-212ENST00000549804 7844 ntTSL 5 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 NPAP1-201ENST00000329468 7526 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 BIRC5-201ENST00000301633 2711 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
KCNIP3Q9Y2W7 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC11.85□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms