RNA–Protein interactions for RNA: ENST00000399448.5

PTPN6-202, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPN6, Length 2,159 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-202ENST00000399448 NISCHQ9Y2I1 1504 aa29.01■■■□□ 2.24
PTPN6-202ENST00000399448 CCDC180Q9P1Z9 1646 aa24.83■■□□□ 1.57
PTPN6-202ENST00000399448 ZCCHC6Q5VYS8 1495 aaKnown RBP24.5■■□□□ 1.51
PTPN6-202ENST00000399448 SHROOM4Q9ULL8 1493 aa24.36■■□□□ 1.49
PTPN6-202ENST00000399448 DCAF8L2P0C7V8 631 aa23.92■■□□□ 1.42
PTPN6-202ENST00000399448 DCAF1Q9Y4B6 1507 aa23.92■■□□□ 1.42
PTPN6-202ENST00000399448 SUPT5HO00267 1087 aaKnown RBP23.85■■□□□ 1.41
PTPN6-202ENST00000399448 MYO15BQ96JP2 1530 aa23.32■■□□□ 1.32
PTPN6-202ENST00000399448 CHIC1Q5VXU3 224 aa23.19■■□□□ 1.3
PTPN6-202ENST00000399448 SCRIBQ14160 1630 aa23.07■■□□□ 1.28
PTPN6-202ENST00000399448 ABCC9O60706 1549 aa23.06■■□□□ 1.28
PTPN6-202ENST00000399448 NACADO15069 1562 aa23■■□□□ 1.27
PTPN6-202ENST00000399448 RSF1Q96T23 1441 aaPredicted RBP22.85■■□□□ 1.25
PTPN6-202ENST00000399448 RB1CC1Q8TDY2 1594 aa22.63■■□□□ 1.21
PTPN6-202ENST00000399448 CECR2Q9BXF3 1484 aa22.55■■□□□ 1.2
PTPN6-202ENST00000399448 MROH2BQ7Z745 1585 aa22.48■■□□□ 1.19
PTPN6-202ENST00000399448 LOC105371045A0A1W2PR82 267 aa22.4■■□□□ 1.18
PTPN6-202ENST00000399448 WIZO95785 1651 aa22.33■■□□□ 1.17
PTPN6-202ENST00000399448 TRIM41Q8WV44 630 aa22.32■■□□□ 1.16
PTPN6-202ENST00000399448 BAZ1AQ9NRL2 1556 aaPredicted RBP22.31■■□□□ 1.16
PTPN6-202ENST00000399448 UNC13AQ9UPW8 1703 aa22.21■■□□□ 1.15
PTPN6-202ENST00000399448 PCGF6Q9BYE7 350 aa22.19■■□□□ 1.14
PTPN6-202ENST00000399448 HRCP23327 699 aa22.14■■□□□ 1.13
PTPN6-202ENST00000399448 SMARCA4P51532 1647 aa22.12■■□□□ 1.13
PTPN6-202ENST00000399448 TOP2AP11388 1531 aaKnown RBP22.06■■□□□ 1.12
PTPN6-202ENST00000399448 EIF4G1Q04637 1599 aaKnown RBP22■■□□□ 1.11
PTPN6-202ENST00000399448 FAM9AQ8IZU1 332 aaPredicted RBP22■■□□□ 1.11
PTPN6-202ENST00000399448 BICRAQ9NZM4 1560 aa21.97■■□□□ 1.11
PTPN6-202ENST00000399448 TRIM26Q12899 539 aaPredicted RBP21.94■■□□□ 1.1
PTPN6-202ENST00000399448 CCDC88BA6NC98 1476 aa21.93■■□□□ 1.1
PTPN6-202ENST00000399448 SMARCA2P51531 1590 aa21.91■■□□□ 1.1
PTPN6-202ENST00000399448 PABPN1Q86U42 306 aaKnown RBP eCLIP21.9■■□□□ 1.1
PTPN6-202ENST00000399448 PEG3Q9GZU2 1588 aa21.78■■□□□ 1.08
PTPN6-202ENST00000399448 ABCC8Q09428 1581 aa21.72■■□□□ 1.07
PTPN6-202ENST00000399448 EHMT2Q96KQ7 1210 aa21.71■■□□□ 1.07
PTPN6-202ENST00000399448 ATAD2BQ9ULI0 1458 aa21.6■■□□□ 1.05
PTPN6-202ENST00000399448 PPARGC1BQ86YN6 1023 aaKnown RBP21.55■■□□□ 1.04
PTPN6-202ENST00000399448 EEA1Q15075 1411 aa21.53■■□□□ 1.04
PTPN6-202ENST00000399448 BAZ1BQ9UIG0 1483 aaKnown RBP21.52■■□□□ 1.03
PTPN6-202ENST00000399448 SOGA1O94964 1423 aa21.5■■□□□ 1.03
PTPN6-202ENST00000399448 WRNQ14191 1432 aaPredicted RBP eCLIP21.47■■□□□ 1.03
PTPN6-202ENST00000399448 ZEB1P37275 1124 aaPredicted RBP21.44■■□□□ 1.02
PTPN6-202ENST00000399448 CSRNP3Q8WYN3 585 aa21.44■■□□□ 1.02
PTPN6-202ENST00000399448 TNIKQ9UKE5 1360 aa21.4■■□□□ 1.02
PTPN6-202ENST00000399448 RUSC2Q8N2Y8 1516 aa21.39■■□□□ 1.01
PTPN6-202ENST00000399448 CEP162Q5TB80 1403 aa21.35■■□□□ 1.01
PTPN6-202ENST00000399448 SYNJ1O43426 1573 aa21.34■■□□□ 1.01
PTPN6-202ENST00000399448 GOLGA3Q08378 1498 aa21.29■■□□□ 1
PTPN6-202ENST00000399448 UBTFP17480 764 aaKnown RBP21.27■■□□□ 1
PTPN6-202ENST00000399448 NCAPD3P42695 1498 aa21.27■■□□□ 1
PTPN6-202ENST00000399448 HMGXB3Q12766 1538 aa21.25■□□□□ 0.99
PTPN6-202ENST00000399448 CEP164Q9UPV0 1460 aa21.21■□□□□ 0.99
PTPN6-202ENST00000399448 KIF21BO75037 1637 aa21.19■□□□□ 0.98
PTPN6-202ENST00000399448 TOP2BQ02880 1626 aa21.16■□□□□ 0.98
PTPN6-202ENST00000399448 BIVM-ERCC5R4GMW8 1640 aa21.1■□□□□ 0.97
PTPN6-202ENST00000399448 CFTRP13569 1480 aa21.01■□□□□ 0.95
PTPN6-202ENST00000399448 CLIP1P30622 1438 aa21.01■□□□□ 0.95
PTPN6-202ENST00000399448 RAPGEF2Q9Y4G8 1499 aa21.01■□□□□ 0.95
PTPN6-202ENST00000399448 TTBK1Q5TCY1 1321 aaPredicted RBP20.98■□□□□ 0.95
PTPN6-202ENST00000399448 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.97■□□□□ 0.95
PTPN6-202ENST00000399448 CCER1Q8TC90 406 aaPredicted RBP20.97■□□□□ 0.95
PTPN6-202ENST00000399448 CUX1P39880 1505 aa20.96■□□□□ 0.95
PTPN6-202ENST00000399448 VPS8Q8N3P4 1428 aa20.92■□□□□ 0.94
PTPN6-202ENST00000399448 ERICH3Q5RHP9 1530 aa20.91■□□□□ 0.94
PTPN6-202ENST00000399448 PRXQ9BXM0 1461 aa20.9■□□□□ 0.94
PTPN6-202ENST00000399448 KIF27Q86VH2 1401 aa20.86■□□□□ 0.93
PTPN6-202ENST00000399448 PRDM2Q13029 1718 aa20.85■□□□□ 0.93
PTPN6-202ENST00000399448 CADPSQ9ULU8 1353 aa20.81■□□□□ 0.92
PTPN6-202ENST00000399448 APLP2Q06481 763 aa20.81■□□□□ 0.92
PTPN6-202ENST00000399448 RANGAP1P46060 587 aaPredicted RBP20.76■□□□□ 0.91
PTPN6-202ENST00000399448 CC2D2AQ9P2K1 1620 aa20.75■□□□□ 0.91
PTPN6-202ENST00000399448 ARAP1Q96P48 1450 aa20.69■□□□□ 0.9
PTPN6-202ENST00000399448 CUX2O14529 1486 aa20.65■□□□□ 0.9
PTPN6-202ENST00000399448 IGF1RP08069 1367 aa20.63■□□□□ 0.89
PTPN6-202ENST00000399448 HNRNPUL2Q1KMD3 747 aaKnown RBP20.63■□□□□ 0.89
PTPN6-202ENST00000399448 FGD5Q6ZNL6 1462 aa20.61■□□□□ 0.89
PTPN6-202ENST00000399448 FANCD2Q9BXW9 1451 aa20.58■□□□□ 0.88
PTPN6-202ENST00000399448 ARHGAP35Q9NRY4 1499 aa20.55■□□□□ 0.88
PTPN6-202ENST00000399448 CARMIL1Q5VZK9 1371 aa20.54■□□□□ 0.88
PTPN6-202ENST00000399448 KANK4Q5T7N3 995 aaPredicted RBP20.51■□□□□ 0.87
PTPN6-202ENST00000399448 DNMBPQ6XZF7 1577 aa20.49■□□□□ 0.87
PTPN6-202ENST00000399448 DIEXFQ68CQ4 756 aaKnown RBP20.45■□□□□ 0.86
PTPN6-202ENST00000399448 TOPBP1Q92547 1522 aa20.43■□□□□ 0.86
PTPN6-202ENST00000399448 RRBP1Q9P2E9 1410 aaKnown RBP20.42■□□□□ 0.86
PTPN6-202ENST00000399448 ABCA10Q8WWZ4 1543 aa20.42■□□□□ 0.86
PTPN6-202ENST00000399448 NESP48681 1621 aa20.42■□□□□ 0.86
PTPN6-202ENST00000399448 ZNF316A6NFI3 1004 aaPredicted RBP20.41■□□□□ 0.86
PTPN6-202ENST00000399448 POLA1P09884 1462 aaPredicted RBP20.4■□□□□ 0.86
PTPN6-202ENST00000399448 RAD54L2Q9Y4B4 1467 aa20.39■□□□□ 0.85
PTPN6-202ENST00000399448 MAP3K1Q13233 1512 aa20.38■□□□□ 0.85
PTPN6-202ENST00000399448 LAMC3Q9Y6N6 1575 aa20.38■□□□□ 0.85
PTPN6-202ENST00000399448 CLSPNQ9HAW4 1339 aa20.35■□□□□ 0.85
PTPN6-202ENST00000399448 CCNB3Q8WWL7 1395 aa20.32■□□□□ 0.84
PTPN6-202ENST00000399448 TIAM1Q13009 1591 aa20.31■□□□□ 0.84
PTPN6-202ENST00000399448 FHAD1B1AJZ9 1412 aa20.3■□□□□ 0.84
PTPN6-202ENST00000399448 CUL7Q14999 1698 aa20.29■□□□□ 0.84
PTPN6-202ENST00000399448 DHX57Q6P158 1386 aaKnown RBP20.28■□□□□ 0.84
PTPN6-202ENST00000399448 URB2Q14146 1524 aaKnown RBP20.28■□□□□ 0.84
PTPN6-202ENST00000399448 PDS5BQ9NTI5 1447 aa20.25■□□□□ 0.83
PTPN6-202ENST00000399448 LRRC9Q6ZRR7 1453 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms