Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
FOXA1P55317 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC13.64□□□□□ -0.23
FOXA1P55317 STX1A-203ENST00000395155 783 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA1P55317 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.64□□□□□ -0.23
FOXA1P55317 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA1P55317 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
FOXA1P55317 MTX1P1-201ENST00000440904 838 ntBASIC13.64□□□□□ -0.23
FOXA1P55317 GAPDHP21-201ENST00000450301 1010 ntBASIC13.64□□□□□ -0.23
FOXA1P55317 ACA64.2-201ENST00000459014 129 ntBASIC13.64□□□□□ -0.23
FOXA1P55317 RN7SL277P-201ENST00000481521 288 ntBASIC13.64□□□□□ -0.23
FOXA1P55317 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
FOXA1P55317 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC13.64□□□□□ -0.23
FOXA1P55317 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA1P55317 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.64□□□□□ -0.23
FOXA1P55317 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC13.64□□□□□ -0.23
FOXA1P55317 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC13.64□□□□□ -0.23
FOXA1P55317 BNIP3P13-201ENST00000599968 566 ntBASIC13.64□□□□□ -0.23
FOXA1P55317 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
FOXA1P55317 LINC02084-201ENST00000606069 1096 ntBASIC13.64□□□□□ -0.23
FOXA1P55317 AC022748.3-201ENST00000621828 275 ntBASIC13.64□□□□□ -0.23
FOXA1P55317 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
FOXA1P55317 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC13.64□□□□□ -0.23
FOXA1P55317 PCDHB19P-202ENST00000625133 2914 ntBASIC13.64□□□□□ -0.23
FOXA1P55317 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
FOXA1P55317 MARK2P16-201ENST00000605714 1723 ntBASIC13.64□□□□□ -0.23
FOXA1P55317 LINC01679-201ENST00000442815 2798 ntTSL 3 BASIC13.64□□□□□ -0.23
FOXA1P55317 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
FOXA1P55317 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC13.64□□□□□ -0.23
FOXA1P55317 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC13.64□□□□□ -0.23
FOXA1P55317 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC13.63□□□□□ -0.23
FOXA1P55317 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA1P55317 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA1P55317 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA1P55317 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC13.63□□□□□ -0.23
FOXA1P55317 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.63□□□□□ -0.23
FOXA1P55317 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC13.63□□□□□ -0.23
FOXA1P55317 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
FOXA1P55317 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.63□□□□□ -0.23
FOXA1P55317 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA1P55317 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.63□□□□□ -0.23
FOXA1P55317 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC13.63□□□□□ -0.23
FOXA1P55317 MIR4259-201ENST00000584466 101 ntBASIC13.63□□□□□ -0.23
FOXA1P55317 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC13.63□□□□□ -0.23
FOXA1P55317 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC13.63□□□□□ -0.23
FOXA1P55317 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.63□□□□□ -0.23
FOXA1P55317 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.63□□□□□ -0.23
FOXA1P55317 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC13.63□□□□□ -0.23
FOXA1P55317 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
FOXA1P55317 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.63□□□□□ -0.23
FOXA1P55317 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
FOXA1P55317 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 ZNF493-208ENST00000599461 1769 ntBASIC13.63□□□□□ -0.23
FOXA1P55317 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA1P55317 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA1P55317 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
FOXA1P55317 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA1P55317 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
FOXA1P55317 DYNC1I1-201ENST00000324972 2950 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA1P55317 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA1P55317 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
FOXA1P55317 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA1P55317 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms