Protein–RNA interactions for Protein: P25942

CD40, Tumor necrosis factor receptor superfamily member 5, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40P25942 DBP-202ENST00000593500 712 ntTSL 2 BASIC12.13□□□□□ -0.47
CD40P25942 AC005041.3-201ENST00000606287 649 ntBASIC12.13□□□□□ -0.47
CD40P25942 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
CD40P25942 AP001065.2-201ENST00000617205 644 ntBASIC12.13□□□□□ -0.47
CD40P25942 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CD40P25942 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CD40P25942 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
CD40P25942 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC12.13□□□□□ -0.47
CD40P25942 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC12.13□□□□□ -0.47
CD40P25942 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CD40P25942 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC12.13□□□□□ -0.47
CD40P25942 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CD40P25942 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.13□□□□□ -0.47
CD40P25942 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
CD40P25942 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
CD40P25942 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CD40P25942 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CD40P25942 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC12.13□□□□□ -0.47
CD40P25942 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC12.12□□□□□ -0.47
CD40P25942 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 PDXDC2P-206ENST00000534700 1315 ntBASIC12.12□□□□□ -0.47
CD40P25942 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC12.12□□□□□ -0.47
CD40P25942 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC12.12□□□□□ -0.47
CD40P25942 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC12.12□□□□□ -0.47
CD40P25942 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC12.12□□□□□ -0.47
CD40P25942 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC12.12□□□□□ -0.47
CD40P25942 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC12.12□□□□□ -0.47
CD40P25942 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
CD40P25942 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC12.12□□□□□ -0.47
CD40P25942 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC12.12□□□□□ -0.47
CD40P25942 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC12.12□□□□□ -0.47
CD40P25942 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC12.12□□□□□ -0.47
CD40P25942 AC092573.1-201ENST00000433054 884 ntBASIC12.12□□□□□ -0.47
CD40P25942 LYPLA2P1-203ENST00000447689 696 ntBASIC12.12□□□□□ -0.47
CD40P25942 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC12.12□□□□□ -0.47
CD40P25942 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC12.12□□□□□ -0.47
CD40P25942 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
CD40P25942 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC12.12□□□□□ -0.47
CD40P25942 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC12.12□□□□□ -0.47
CD40P25942 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
CD40P25942 MIR6727-201ENST00000620702 65 ntBASIC12.12□□□□□ -0.47
CD40P25942 AL161773.1-201ENST00000624845 863 ntBASIC12.12□□□□□ -0.47
CD40P25942 LINC00244-201ENST00000625073 613 ntBASIC12.12□□□□□ -0.47
CD40P25942 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
CD40P25942 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 AC090502.4-201ENST00000551714 1386 ntBASIC12.12□□□□□ -0.47
CD40P25942 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC12.12□□□□□ -0.47
CD40P25942 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC12.12□□□□□ -0.47
CD40P25942 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CD40P25942 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC12.12□□□□□ -0.47
CD40P25942 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC12.11□□□□□ -0.47
CD40P25942 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC12.11□□□□□ -0.47
CD40P25942 HSPA7-201ENST00000445535 1927 ntBASIC12.11□□□□□ -0.47
CD40P25942 AC090643.2-201ENST00000623442 2029 ntBASIC12.11□□□□□ -0.47
CD40P25942 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC12.11□□□□□ -0.47
CD40P25942 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
CD40P25942 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC12.11□□□□□ -0.47
CD40P25942 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
CD40P25942 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
CD40P25942 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC12.11□□□□□ -0.47
CD40P25942 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
CD40P25942 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC12.11□□□□□ -0.47
CD40P25942 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CD40P25942 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC12.11□□□□□ -0.47
CD40P25942 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
CD40P25942 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms