Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC17.31■□□□□ 0.36
RC3H1Q5TC82 AC136475.7-201ENST00000602949 592 ntBASIC17.31■□□□□ 0.36
RC3H1Q5TC82 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC17.31■□□□□ 0.36
RC3H1Q5TC82 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC17.31■□□□□ 0.36
RC3H1Q5TC82 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC17.31■□□□□ 0.36
RC3H1Q5TC82 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
RC3H1Q5TC82 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.31■□□□□ 0.36
RC3H1Q5TC82 CICP24-201ENST00000605464 2705 ntBASIC17.31■□□□□ 0.36
RC3H1Q5TC82 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RC3H1Q5TC82 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.31■□□□□ 0.36
RC3H1Q5TC82 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RC3H1Q5TC82 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RC3H1Q5TC82 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 AC026271.1-201ENST00000447794 1348 ntBASIC17.3■□□□□ 0.36
RC3H1Q5TC82 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 OR2V2-201ENST00000328275 948 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 SNORA50D-201ENST00000408059 134 ntBASIC17.3■□□□□ 0.36
RC3H1Q5TC82 SNORD88B-201ENST00000408454 91 ntBASIC17.3■□□□□ 0.36
RC3H1Q5TC82 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 RN7SL838P-201ENST00000481676 295 ntBASIC17.3■□□□□ 0.36
RC3H1Q5TC82 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 SAA2-206ENST00000530400 323 ntTSL 3 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 SNORA50D-202ENST00000627561 132 ntBASIC17.3■□□□□ 0.36
RC3H1Q5TC82 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RC3H1Q5TC82 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 TKT-201ENST00000296289 1931 ntTSL 5 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 SLC25A5-201ENST00000317881 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 AC006328.1-201ENST00000437571 379 ntBASIC17.29■□□□□ 0.36
RC3H1Q5TC82 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 PCTP-206ENST00000573500 919 ntTSL 3 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 RPS5-205ENST00000598495 800 ntTSL 3 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 SMUG1-220ENST00000513838 2119 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
RC3H1Q5TC82 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RC3H1Q5TC82 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RC3H1Q5TC82 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms