Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
COL9A1P20849 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
COL9A1P20849 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
COL9A1P20849 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 TUBA3GP-201ENST00000410028 1325 ntBASIC14.41□□□□□ -0.1
COL9A1P20849 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL9A1P20849 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
COL9A1P20849 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.41□□□□□ -0.1
COL9A1P20849 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.41□□□□□ -0.1
COL9A1P20849 MTHFR-210ENST00000641407 2387 ntBASIC14.41□□□□□ -0.1
COL9A1P20849 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.41□□□□□ -0.1
COL9A1P20849 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.41□□□□□ -0.1
COL9A1P20849 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL9A1P20849 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL9A1P20849 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.1
COL9A1P20849 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
COL9A1P20849 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
COL9A1P20849 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL9A1P20849 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
COL9A1P20849 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.41□□□□□ -0.1
COL9A1P20849 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.41□□□□□ -0.1
COL9A1P20849 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL9A1P20849 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
COL9A1P20849 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL9A1P20849 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL9A1P20849 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL9A1P20849 GH1-203ENST00000351388 685 ntTSL 2 BASIC14.41□□□□□ -0.1
COL9A1P20849 CRIP1P2-201ENST00000425396 228 ntBASIC14.41□□□□□ -0.1
COL9A1P20849 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC14.41□□□□□ -0.1
COL9A1P20849 PPP1R26-AS1-201ENST00000455039 643 ntTSL 4 BASIC14.41□□□□□ -0.1
COL9A1P20849 ALDOAP1-201ENST00000491506 1078 ntBASIC14.41□□□□□ -0.1
COL9A1P20849 GOLGA2P8-201ENST00000505201 779 ntBASIC14.41□□□□□ -0.1
COL9A1P20849 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL9A1P20849 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.41□□□□□ -0.1
COL9A1P20849 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC14.41□□□□□ -0.1
COL9A1P20849 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC14.41□□□□□ -0.1
COL9A1P20849 NUDT4-205ENST00000548662 765 ntTSL 3 BASIC14.41□□□□□ -0.1
COL9A1P20849 AP002371.2-201ENST00000624450 503 ntBASIC14.41□□□□□ -0.1
COL9A1P20849 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC14.41□□□□□ -0.1
COL9A1P20849 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
COL9A1P20849 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.41□□□□□ -0.1
COL9A1P20849 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL9A1P20849 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
COL9A1P20849 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL9A1P20849 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL9A1P20849 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL9A1P20849 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC14.41□□□□□ -0.1
COL9A1P20849 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
COL9A1P20849 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.4□□□□□ -0.1
COL9A1P20849 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
COL9A1P20849 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.4□□□□□ -0.1
COL9A1P20849 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC14.4□□□□□ -0.1
COL9A1P20849 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 SFR1P2-201ENST00000421841 730 ntBASIC14.4□□□□□ -0.1
COL9A1P20849 AC074019.1-201ENST00000428788 1096 ntBASIC14.4□□□□□ -0.1
COL9A1P20849 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC14.4□□□□□ -0.1
COL9A1P20849 WBP1LP6-201ENST00000438434 424 ntBASIC14.4□□□□□ -0.1
COL9A1P20849 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 CNN2P1-201ENST00000453616 918 ntBASIC14.4□□□□□ -0.1
COL9A1P20849 RN7SL523P-201ENST00000484401 298 ntBASIC14.4□□□□□ -0.1
COL9A1P20849 LDHAL6CP-201ENST00000502352 1142 ntBASIC14.4□□□□□ -0.1
COL9A1P20849 CSNK1A1P3-201ENST00000504105 330 ntBASIC14.4□□□□□ -0.1
COL9A1P20849 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC14.4□□□□□ -0.1
COL9A1P20849 RNF139-AS1-202ENST00000519861 359 ntTSL 3 BASIC14.4□□□□□ -0.1
COL9A1P20849 ZNF268-208ENST00000539248 759 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 ZNF268-212ENST00000542711 861 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 FOS-205ENST00000555242 629 ntTSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 GRAMD4P6-201ENST00000556999 244 ntBASIC14.4□□□□□ -0.1
COL9A1P20849 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC14.4□□□□□ -0.1
COL9A1P20849 SKA2-205ENST00000580541 689 ntTSL 3 BASIC14.4□□□□□ -0.1
COL9A1P20849 RN7SL819P-201ENST00000581896 270 ntBASIC14.4□□□□□ -0.1
COL9A1P20849 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC14.4□□□□□ -0.1
COL9A1P20849 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC14.4□□□□□ -0.1
COL9A1P20849 AL732372.1-203ENST00000635159 994 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms