Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
CLRN1P58418 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC12.67□□□□□ -0.38
CLRN1P58418 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC12.67□□□□□ -0.38
CLRN1P58418 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC12.67□□□□□ -0.38
CLRN1P58418 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 SPTBN2-201ENST00000309996 7866 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CLRN1P58418 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC12.67□□□□□ -0.38
CLRN1P58418 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CLRN1P58418 CSPG4P11-201ENST00000560634 4910 ntBASIC12.66□□□□□ -0.38
CLRN1P58418 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 TP73-203ENST00000357733 4899 ntTSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 GRN-222ENST00000639447 1314 ntTSL 2 BASIC12.66□□□□□ -0.38
CLRN1P58418 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC12.66□□□□□ -0.38
CLRN1P58418 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC12.66□□□□□ -0.38
CLRN1P58418 TSPY25P-201ENST00000429463 745 ntBASIC12.66□□□□□ -0.38
CLRN1P58418 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC12.66□□□□□ -0.38
CLRN1P58418 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC12.66□□□□□ -0.38
CLRN1P58418 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC12.66□□□□□ -0.38
CLRN1P58418 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC12.66□□□□□ -0.38
CLRN1P58418 SYT17-208ENST00000568433 812 ntTSL 3 BASIC12.66□□□□□ -0.38
CLRN1P58418 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC12.66□□□□□ -0.38
CLRN1P58418 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC12.66□□□□□ -0.38
CLRN1P58418 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC12.66□□□□□ -0.38
CLRN1P58418 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC12.66□□□□□ -0.38
CLRN1P58418 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 USP39-220ENST00000613444 2161 ntTSL 2 BASIC12.66□□□□□ -0.38
CLRN1P58418 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC12.66□□□□□ -0.38
CLRN1P58418 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC12.66□□□□□ -0.38
CLRN1P58418 AP2A2-202ENST00000448903 4575 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CLRN1P58418 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
CLRN1P58418 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CLRN1P58418 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC12.65□□□□□ -0.38
CLRN1P58418 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CLRN1P58418 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC12.65□□□□□ -0.38
CLRN1P58418 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
CLRN1P58418 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CLRN1P58418 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC12.65□□□□□ -0.38
CLRN1P58418 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC12.65□□□□□ -0.38
CLRN1P58418 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CLRN1P58418 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC12.65□□□□□ -0.38
CLRN1P58418 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CLRN1P58418 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CLRN1P58418 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CLRN1P58418 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
CLRN1P58418 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC12.65□□□□□ -0.38
CLRN1P58418 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC12.65□□□□□ -0.38
CLRN1P58418 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC12.65□□□□□ -0.38
CLRN1P58418 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CLRN1P58418 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CLRN1P58418 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CLRN1P58418 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CLRN1P58418 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CLRN1P58418 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC12.65□□□□□ -0.38
CLRN1P58418 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms