RNA–Protein interactions for RNA: ENST00000380829.5

CLCN4-201, Transcript of chloride voltage-gated channel 4, humanhuman

TSL 5 BASIC

Gene CLCN4, Length 2,418 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-201ENST00000380829 NISCHQ9Y2I1 1504 aa31.07■■■□□ 2.56
CLCN4-201ENST00000380829 CCDC180Q9P1Z9 1646 aa26.76■■□□□ 1.88
CLCN4-201ENST00000380829 ZCCHC6Q5VYS8 1495 aaKnown RBP26.17■■□□□ 1.78
CLCN4-201ENST00000380829 SHROOM4Q9ULL8 1493 aa25.94■■□□□ 1.74
CLCN4-201ENST00000380829 DCAF8L2P0C7V8 631 aa25.82■■□□□ 1.72
CLCN4-201ENST00000380829 DCAF1Q9Y4B6 1507 aa25.55■■□□□ 1.68
CLCN4-201ENST00000380829 ABCC9O60706 1549 aa25.22■■□□□ 1.63
CLCN4-201ENST00000380829 SUPT5HO00267 1087 aaKnown RBP25.14■■□□□ 1.61
CLCN4-201ENST00000380829 MYO15BQ96JP2 1530 aa25.05■■□□□ 1.6
CLCN4-201ENST00000380829 SCRIBQ14160 1630 aa24.91■■□□□ 1.58
CLCN4-201ENST00000380829 NACADO15069 1562 aa24.87■■□□□ 1.57
CLCN4-201ENST00000380829 RB1CC1Q8TDY2 1594 aa24.59■■□□□ 1.53
CLCN4-201ENST00000380829 RSF1Q96T23 1441 aaPredicted RBP24.32■■□□□ 1.48
CLCN4-201ENST00000380829 CECR2Q9BXF3 1484 aa24.23■■□□□ 1.47
CLCN4-201ENST00000380829 UNC13AQ9UPW8 1703 aa24.18■■□□□ 1.46
CLCN4-201ENST00000380829 CHIC1Q5VXU3 224 aa24.17■■□□□ 1.46
CLCN4-201ENST00000380829 MROH2BQ7Z745 1585 aa24.1■■□□□ 1.45
CLCN4-201ENST00000380829 PABPN1Q86U42 306 aaKnown RBP eCLIP23.95■■□□□ 1.42
CLCN4-201ENST00000380829 WIZO95785 1651 aa23.94■■□□□ 1.42
CLCN4-201ENST00000380829 BAZ1AQ9NRL2 1556 aaPredicted RBP23.93■■□□□ 1.42
CLCN4-201ENST00000380829 BICRAQ9NZM4 1560 aa23.91■■□□□ 1.42
CLCN4-201ENST00000380829 SMARCA4P51532 1647 aa23.8■■□□□ 1.4
CLCN4-201ENST00000380829 TOP2AP11388 1531 aaKnown RBP23.59■■□□□ 1.37
CLCN4-201ENST00000380829 TRIM41Q8WV44 630 aa23.5■■□□□ 1.35
CLCN4-201ENST00000380829 CCDC88BA6NC98 1476 aa23.44■■□□□ 1.34
CLCN4-201ENST00000380829 SMARCA2P51531 1590 aa23.43■■□□□ 1.34
CLCN4-201ENST00000380829 PEG3Q9GZU2 1588 aa23.4■■□□□ 1.34
CLCN4-201ENST00000380829 LOC105371045A0A1W2PR82 267 aa23.39■■□□□ 1.33
CLCN4-201ENST00000380829 EIF4G1Q04637 1599 aaKnown RBP23.38■■□□□ 1.33
CLCN4-201ENST00000380829 ATAD2BQ9ULI0 1458 aa23.32■■□□□ 1.32
CLCN4-201ENST00000380829 FAM9AQ8IZU1 332 aaPredicted RBP23.23■■□□□ 1.31
CLCN4-201ENST00000380829 BAZ1BQ9UIG0 1483 aaKnown RBP23.23■■□□□ 1.31
CLCN4-201ENST00000380829 ABCC8Q09428 1581 aa23.17■■□□□ 1.3
CLCN4-201ENST00000380829 HRCP23327 699 aa23.15■■□□□ 1.3
CLCN4-201ENST00000380829 EHMT2Q96KQ7 1210 aa23.02■■□□□ 1.28
CLCN4-201ENST00000380829 NCAPD3P42695 1498 aa22.99■■□□□ 1.27
CLCN4-201ENST00000380829 HMGXB3Q12766 1538 aa22.97■■□□□ 1.27
CLCN4-201ENST00000380829 WRNQ14191 1432 aaPredicted RBP eCLIP22.88■■□□□ 1.25
CLCN4-201ENST00000380829 PPARGC1BQ86YN6 1023 aaKnown RBP22.82■■□□□ 1.24
CLCN4-201ENST00000380829 SOGA1O94964 1423 aa22.82■■□□□ 1.24
CLCN4-201ENST00000380829 SYNJ1O43426 1573 aa22.79■■□□□ 1.24
CLCN4-201ENST00000380829 PCGF6Q9BYE7 350 aa22.75■■□□□ 1.23
CLCN4-201ENST00000380829 CC2D2AQ9P2K1 1620 aa22.74■■□□□ 1.23
CLCN4-201ENST00000380829 RUSC2Q8N2Y8 1516 aa22.73■■□□□ 1.23
CLCN4-201ENST00000380829 EEA1Q15075 1411 aa22.65■■□□□ 1.22
CLCN4-201ENST00000380829 CFTRP13569 1480 aa22.63■■□□□ 1.21
CLCN4-201ENST00000380829 CSRNP3Q8WYN3 585 aa22.63■■□□□ 1.21
CLCN4-201ENST00000380829 TOP2BQ02880 1626 aa22.58■■□□□ 1.21
CLCN4-201ENST00000380829 BIVM-ERCC5R4GMW8 1640 aa22.52■■□□□ 1.2
CLCN4-201ENST00000380829 TRIM26Q12899 539 aaPredicted RBP22.5■■□□□ 1.19
CLCN4-201ENST00000380829 CADPSQ9ULU8 1353 aa22.49■■□□□ 1.19
CLCN4-201ENST00000380829 CUX1P39880 1505 aa22.49■■□□□ 1.19
CLCN4-201ENST00000380829 PELP1Q8IZL8 1130 aaKnown RBP22.47■■□□□ 1.19
CLCN4-201ENST00000380829 UBTFP17480 764 aaKnown RBP22.47■■□□□ 1.19
CLCN4-201ENST00000380829 DNAJC5BQ9UF47 199 aa22.46■■□□□ 1.19
CLCN4-201ENST00000380829 GOLGA3Q08378 1498 aa22.45■■□□□ 1.18
CLCN4-201ENST00000380829 TNIKQ9UKE5 1360 aa22.45■■□□□ 1.18
CLCN4-201ENST00000380829 PRDM2Q13029 1718 aa22.45■■□□□ 1.18
CLCN4-201ENST00000380829 CEP162Q5TB80 1403 aa22.43■■□□□ 1.18
CLCN4-201ENST00000380829 CEP164Q9UPV0 1460 aa22.39■■□□□ 1.18
CLCN4-201ENST00000380829 KIF21BO75037 1637 aa22.38■■□□□ 1.17
CLCN4-201ENST00000380829 RAPGEF2Q9Y4G8 1499 aa22.3■■□□□ 1.16
CLCN4-201ENST00000380829 NESP48681 1621 aa22.28■■□□□ 1.16
CLCN4-201ENST00000380829 FANCD2Q9BXW9 1451 aa22.27■■□□□ 1.16
CLCN4-201ENST00000380829 KIF27Q86VH2 1401 aa22.23■■□□□ 1.15
CLCN4-201ENST00000380829 FGD5Q6ZNL6 1462 aa22.18■■□□□ 1.14
CLCN4-201ENST00000380829 PRXQ9BXM0 1461 aa22.18■■□□□ 1.14
CLCN4-201ENST00000380829 CLIP1P30622 1438 aa22.15■■□□□ 1.14
CLCN4-201ENST00000380829 RANGAP1P46060 587 aaPredicted RBP22.15■■□□□ 1.14
CLCN4-201ENST00000380829 CUX2O14529 1486 aa22.14■■□□□ 1.14
CLCN4-201ENST00000380829 ERICH3Q5RHP9 1530 aa22.13■■□□□ 1.13
CLCN4-201ENST00000380829 TTBK1Q5TCY1 1321 aaPredicted RBP22.12■■□□□ 1.13
CLCN4-201ENST00000380829 LAMC3Q9Y6N6 1575 aa22.12■■□□□ 1.13
CLCN4-201ENST00000380829 SCAF1Q9H7N4 1312 aaKnown RBP22.09■■□□□ 1.13
CLCN4-201ENST00000380829 DNMBPQ6XZF7 1577 aa22.09■■□□□ 1.13
CLCN4-201ENST00000380829 TOPBP1Q92547 1522 aa22.07■■□□□ 1.12
CLCN4-201ENST00000380829 IGF1RP08069 1367 aa22.03■■□□□ 1.12
CLCN4-201ENST00000380829 RAD54L2Q9Y4B4 1467 aa22.02■■□□□ 1.11
CLCN4-201ENST00000380829 POLA1P09884 1462 aaPredicted RBP22.01■■□□□ 1.11
CLCN4-201ENST00000380829 PDS5BQ9NTI5 1447 aa21.99■■□□□ 1.11
CLCN4-201ENST00000380829 URB2Q14146 1524 aaKnown RBP21.98■■□□□ 1.11
CLCN4-201ENST00000380829 VPS8Q8N3P4 1428 aa21.98■■□□□ 1.11
CLCN4-201ENST00000380829 CARMIL1Q5VZK9 1371 aa21.93■■□□□ 1.1
CLCN4-201ENST00000380829 ABCA10Q8WWZ4 1543 aa21.93■■□□□ 1.1
CLCN4-201ENST00000380829 KIF21AQ7Z4S6 1674 aa21.92■■□□□ 1.1
CLCN4-201ENST00000380829 ARAP1Q96P48 1450 aa21.88■■□□□ 1.09
CLCN4-201ENST00000380829 APLP2Q06481 763 aa21.83■■□□□ 1.09
CLCN4-201ENST00000380829 ARHGAP35Q9NRY4 1499 aa21.8■■□□□ 1.08
CLCN4-201ENST00000380829 WDR97A6NE52 1622 aa21.79■■□□□ 1.08
CLCN4-201ENST00000380829 TDRD9Q8NDG6 1382 aaKnown RBP21.78■■□□□ 1.08
CLCN4-201ENST00000380829 ZEB1P37275 1124 aaPredicted RBP21.72■■□□□ 1.07
CLCN4-201ENST00000380829 CUL7Q14999 1698 aa21.72■■□□□ 1.07
CLCN4-201ENST00000380829 ABCA5Q8WWZ7 1642 aa21.72■■□□□ 1.07
CLCN4-201ENST00000380829 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.71■■□□□ 1.07
CLCN4-201ENST00000380829 GAPVD1Q14C86 1478 aa21.7■■□□□ 1.06
CLCN4-201ENST00000380829 MRC2Q9UBG0 1479 aa21.69■■□□□ 1.06
CLCN4-201ENST00000380829 TARBP1Q13395 1621 aaKnown RBP21.67■■□□□ 1.06
CLCN4-201ENST00000380829 KANK4Q5T7N3 995 aaPredicted RBP21.64■■□□□ 1.05
CLCN4-201ENST00000380829 CCER1Q8TC90 406 aaPredicted RBP21.62■■□□□ 1.05
CLCN4-201ENST00000380829 P3H3Q8IVL6 736 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms