RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 DCAF8L2P0C7V8 631 aa22.28■■□□□ 1.16
CSPG4P11-201ENST00000560634 SUPT5HO00267 1087 aaKnown RBP21.31■■□□□ 1
CSPG4P11-201ENST00000560634 PELP1Q8IZL8 1130 aaKnown RBP21.25■□□□□ 0.99
CSPG4P11-201ENST00000560634 NISCHQ9Y2I1 1504 aa21.04■□□□□ 0.96
CSPG4P11-201ENST00000560634 APLP2Q06481 763 aa20.67■□□□□ 0.9
CSPG4P11-201ENST00000560634 SHROOM4Q9ULL8 1493 aa20.62■□□□□ 0.89
CSPG4P11-201ENST00000560634 EHMT2Q96KQ7 1210 aa20.57■□□□□ 0.88
CSPG4P11-201ENST00000560634 FAM9AQ8IZU1 332 aaPredicted RBP20.31■□□□□ 0.84
CSPG4P11-201ENST00000560634 CENPBP07199 599 aaPredicted RBP20.3■□□□□ 0.84
CSPG4P11-201ENST00000560634 CCER1Q8TC90 406 aaPredicted RBP20.28■□□□□ 0.84
CSPG4P11-201ENST00000560634 ERICH6Q7L0X2 663 aa20.23■□□□□ 0.83
CSPG4P11-201ENST00000560634 ZEB1P37275 1124 aaPredicted RBP20.22■□□□□ 0.83
CSPG4P11-201ENST00000560634 MYT1Q01538 1121 aa20.21■□□□□ 0.83
CSPG4P11-201ENST00000560634 PCGF6Q9BYE7 350 aa20.19■□□□□ 0.82
CSPG4P11-201ENST00000560634 TTBK1Q5TCY1 1321 aaPredicted RBP19.96■□□□□ 0.79
CSPG4P11-201ENST00000560634 NEFLP07196 543 aa19.86■□□□□ 0.77
CSPG4P11-201ENST00000560634 TRIM41Q8WV44 630 aa19.81■□□□□ 0.76
CSPG4P11-201ENST00000560634 RANGAP1P46060 587 aaPredicted RBP19.68■□□□□ 0.74
CSPG4P11-201ENST00000560634 ATP1B4Q9UN42 357 aaPredicted RBP19.65■□□□□ 0.74
CSPG4P11-201ENST00000560634 UBTFP17480 764 aaKnown RBP19.63■□□□□ 0.73
CSPG4P11-201ENST00000560634 YTHDC1Q96MU7 727 aaKnown RBP19.53■□□□□ 0.72
CSPG4P11-201ENST00000560634 TRIM26Q12899 539 aaPredicted RBP19.36■□□□□ 0.69
CSPG4P11-201ENST00000560634 DAXXQ9UER7 740 aaPredicted RBP19.35■□□□□ 0.69
CSPG4P11-201ENST00000560634 HRCP23327 699 aa19.21■□□□□ 0.67
CSPG4P11-201ENST00000560634 PPARGC1BQ86YN6 1023 aaKnown RBP19.13■□□□□ 0.65
CSPG4P11-201ENST00000560634 POLR3GLQ9BT43 218 aa19.02■□□□□ 0.63
CSPG4P11-201ENST00000560634 ITGAEP38570 1179 aa18.99■□□□□ 0.63
CSPG4P11-201ENST00000560634 RTL5Q5HYW3 569 aaPredicted RBP18.94■□□□□ 0.62
CSPG4P11-201ENST00000560634 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.93■□□□□ 0.62
CSPG4P11-201ENST00000560634 HNRNPUL2Q1KMD3 747 aaKnown RBP18.93■□□□□ 0.62
CSPG4P11-201ENST00000560634 MYT1LQ9UL68 1186 aa18.93■□□□□ 0.62
CSPG4P11-201ENST00000560634 ZNF316A6NFI3 1004 aaPredicted RBP18.84■□□□□ 0.61
CSPG4P11-201ENST00000560634 CHIC1Q5VXU3 224 aa18.81■□□□□ 0.6
CSPG4P11-201ENST00000560634 CLSPNQ9HAW4 1339 aa18.8■□□□□ 0.6
CSPG4P11-201ENST00000560634 LOC105371045A0A1W2PR82 267 aa18.79■□□□□ 0.6
CSPG4P11-201ENST00000560634 DIEXFQ68CQ4 756 aaKnown RBP18.79■□□□□ 0.6
CSPG4P11-201ENST00000560634 CNGB1Q14028 1251 aaPredicted RBP18.74■□□□□ 0.59
CSPG4P11-201ENST00000560634 SLC4A1APQ9BWU0 796 aaKnown RBP18.65■□□□□ 0.58
CSPG4P11-201ENST00000560634 CDK11AQ9UQ88 783 aaPredicted RBP18.51■□□□□ 0.55
CSPG4P11-201ENST00000560634 FAM50AQ14320 339 aaKnown RBP18.51■□□□□ 0.55
CSPG4P11-201ENST00000560634 ANP32CO43423 234 aa18.48■□□□□ 0.55
CSPG4P11-201ENST00000560634 TRIM52Q96A61 297 aa18.48■□□□□ 0.55
CSPG4P11-201ENST00000560634 ZBTB47Q9UFB7 747 aaPredicted RBP18.46■□□□□ 0.55
CSPG4P11-201ENST00000560634 GTF3C3Q9Y5Q9 886 aa18.44■□□□□ 0.54
CSPG4P11-201ENST00000560634 NEUROD1Q13562 356 aa18.4■□□□□ 0.54
CSPG4P11-201ENST00000560634 BCANQ96GW7 911 aa18.38■□□□□ 0.53
CSPG4P11-201ENST00000560634 ZNF326Q5BKZ1 582 aaKnown RBP18.25■□□□□ 0.51
CSPG4P11-201ENST00000560634 CANXP27824 592 aaKnown RBP18.24■□□□□ 0.51
CSPG4P11-201ENST00000560634 ANP32AP39687 249 aaKnown RBP18.24■□□□□ 0.51
CSPG4P11-201ENST00000560634 NEFMP07197 916 aa18.22■□□□□ 0.51
CSPG4P11-201ENST00000560634 ACIN1Q9UKV3 1341 aaKnown RBP18.19■□□□□ 0.5
CSPG4P11-201ENST00000560634 ABCC9O60706 1549 aa18.12■□□□□ 0.49
CSPG4P11-201ENST00000560634 ANP32BQ92688 251 aaKnown RBP18.07■□□□□ 0.48
CSPG4P11-201ENST00000560634 SLC24A1O60721 1099 aa18.02■□□□□ 0.48
CSPG4P11-201ENST00000560634 BCL11AQ9H165 835 aa17.99■□□□□ 0.47
CSPG4P11-201ENST00000560634 NPM2Q86SE8 214 aaKnown RBP17.96■□□□□ 0.47
CSPG4P11-201ENST00000560634 CSRNP3Q8WYN3 585 aa17.96■□□□□ 0.47
CSPG4P11-201ENST00000560634 UPF2Q9HAU5 1272 aaKnown RBP17.96■□□□□ 0.47
CSPG4P11-201ENST00000560634 GLIPR1L2Q4G1C9 344 aa17.94■□□□□ 0.46
CSPG4P11-201ENST00000560634 HSP90AA1P07900 732 aaKnown RBP17.93■□□□□ 0.46
CSPG4P11-201ENST00000560634 EIF5BO60841 1220 aaKnown RBP17.93■□□□□ 0.46
CSPG4P11-201ENST00000560634 FKBP8Q14318 412 aa17.91■□□□□ 0.46
CSPG4P11-201ENST00000560634 FBLN2P98095 1184 aa17.9■□□□□ 0.46
CSPG4P11-201ENST00000560634 PABPN1Q86U42 306 aaKnown RBP eCLIP17.89■□□□□ 0.45
CSPG4P11-201ENST00000560634 TONSLQ96HA7 1378 aa17.86■□□□□ 0.45
CSPG4P11-201ENST00000560634 HNRNPUQ00839 825 aaKnown RBP eCLIP17.84■□□□□ 0.45
CSPG4P11-201ENST00000560634 P3H3Q8IVL6 736 aa17.81■□□□□ 0.44
CSPG4P11-201ENST00000560634 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.8■□□□□ 0.44
CSPG4P11-201ENST00000560634 ZNF777Q9ULD5 760 aaPredicted RBP17.79■□□□□ 0.44
CSPG4P11-201ENST00000560634 CCDC136Q96JN2 1154 aa17.76■□□□□ 0.43
CSPG4P11-201ENST00000560634 DDX10Q13206 875 aaKnown RBP17.74■□□□□ 0.43
CSPG4P11-201ENST00000560634 FAM9BQ8IZU0 186 aa17.74■□□□□ 0.43
CSPG4P11-201ENST00000560634 TMC1Q8TDI8 760 aa17.72■□□□□ 0.43
CSPG4P11-201ENST00000560634 ARID3CA6NKF2 412 aa17.71■□□□□ 0.43
CSPG4P11-201ENST00000560634 ESF1Q9H501 851 aaKnown RBP17.71■□□□□ 0.42
CSPG4P11-201ENST00000560634 STAG3Q9UJ98 1225 aa17.64■□□□□ 0.41
CSPG4P11-201ENST00000560634 CHGAP10645 457 aaKnown RBP17.63■□□□□ 0.41
CSPG4P11-201ENST00000560634 WDR43Q15061 677 aaKnown RBP eCLIP17.62■□□□□ 0.41
CSPG4P11-201ENST00000560634 DCAF1Q9Y4B6 1507 aa17.61■□□□□ 0.41
CSPG4P11-201ENST00000560634 MRS2Q9HD23 443 aa17.6■□□□□ 0.41
CSPG4P11-201ENST00000560634 SALL2Q9Y467 1007 aaPredicted RBP17.6■□□□□ 0.41
CSPG4P11-201ENST00000560634 NBR1Q14596 966 aa17.59■□□□□ 0.41
CSPG4P11-201ENST00000560634 ANP32EQ9BTT0 268 aa17.58■□□□□ 0.4
CSPG4P11-201ENST00000560634 MYH16Q9H6N6 1097 aa17.53■□□□□ 0.4
CSPG4P11-201ENST00000560634 DDRGK1Q96HY6 314 aa17.52■□□□□ 0.39
CSPG4P11-201ENST00000560634 BECN1Q14457 450 aa17.51■□□□□ 0.39
CSPG4P11-201ENST00000560634 NPM1P06748 294 aaKnown RBP eCLIP17.5■□□□□ 0.39
CSPG4P11-201ENST00000560634 TSPY4P0CV99 314 aa17.5■□□□□ 0.39
CSPG4P11-201ENST00000560634 TSPY10P0CW01 314 aa17.5■□□□□ 0.39
CSPG4P11-201ENST00000560634 ARXQ96QS3 562 aa17.46■□□□□ 0.39
CSPG4P11-201ENST00000560634 EIF4G2P78344 907 aaKnown RBP eCLIP17.46■□□□□ 0.39
CSPG4P11-201ENST00000560634 GOLGA6L22H0YM25 854 aa17.45■□□□□ 0.38
CSPG4P11-201ENST00000560634 NCLP19338 710 aaKnown RBP17.45■□□□□ 0.38
CSPG4P11-201ENST00000560634 CDK11BP21127 795 aaKnown RBP17.45■□□□□ 0.38
CSPG4P11-201ENST00000560634 CHIC2Q9UKJ5 165 aa17.45■□□□□ 0.38
CSPG4P11-201ENST00000560634 TRIM44Q96DX7 344 aaPredicted RBP17.44■□□□□ 0.38
CSPG4P11-201ENST00000560634 MIER1Q8N108 512 aa17.43■□□□□ 0.38
CSPG4P11-201ENST00000560634 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.42■□□□□ 0.38
CSPG4P11-201ENST00000560634 ZCCHC6Q5VYS8 1495 aaKnown RBP17.41■□□□□ 0.38
CSPG4P11-201ENST00000560634 KDM2AQ9Y2K7 1162 aa17.39■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms