Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 AL359878.1-201ENST00000381466 1886 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 TMA16-204ENST00000508268 608 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
COL4A5P29400 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC16.3■□□□□ 0.2
COL4A5P29400 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC16.3■□□□□ 0.2
COL4A5P29400 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC16.3■□□□□ 0.2
COL4A5P29400 AL356740.1-201ENST00000602192 1297 ntBASIC16.3■□□□□ 0.2
COL4A5P29400 AP000553.2-201ENST00000609038 441 ntBASIC16.3■□□□□ 0.2
COL4A5P29400 Z82244.1-201ENST00000631502 840 ntBASIC16.3■□□□□ 0.2
COL4A5P29400 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
COL4A5P29400 DDC-213ENST00000617822 1809 ntTSL 3 BASIC16.29■□□□□ 0.2
COL4A5P29400 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
COL4A5P29400 MST1P2-201ENST00000457982 2291 ntBASIC16.29■□□□□ 0.2
COL4A5P29400 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
COL4A5P29400 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
COL4A5P29400 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
COL4A5P29400 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 AC090643.2-201ENST00000623442 2029 ntBASIC16.29■□□□□ 0.2
COL4A5P29400 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.29■□□□□ 0.2
COL4A5P29400 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
COL4A5P29400 CFL1P6-201ENST00000400899 494 ntBASIC16.29■□□□□ 0.2
COL4A5P29400 U3.41-201ENST00000408711 219 ntBASIC16.29■□□□□ 0.2
COL4A5P29400 AP000343.1-201ENST00000440602 385 ntBASIC16.29■□□□□ 0.2
COL4A5P29400 HTATIP2-203ENST00000443524 967 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL4A5P29400 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC16.29■□□□□ 0.2
COL4A5P29400 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC16.29■□□□□ 0.2
COL4A5P29400 CHCHD7-218ENST00000523975 1805 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
COL4A5P29400 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
COL4A5P29400 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC16.29■□□□□ 0.2
COL4A5P29400 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 AC007389.3-201ENST00000420724 1656 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A5P29400 AP000787.1-205ENST00000536683 1485 ntTSL 5 BASIC16.29■□□□□ 0.2
COL4A5P29400 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC16.28■□□□□ 0.2
COL4A5P29400 PXK-210ENST00000479241 2817 ntTSL 2 BASIC16.28■□□□□ 0.2
COL4A5P29400 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
COL4A5P29400 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 KRTAP12-1-201ENST00000391617 588 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
COL4A5P29400 RN7SL69P-201ENST00000468423 272 ntBASIC16.28■□□□□ 0.2
COL4A5P29400 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 AC008808.2-201ENST00000510349 569 ntTSL 3 BASIC16.28■□□□□ 0.2
COL4A5P29400 STMN4-203ENST00000519614 1273 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 AC015818.3-201ENST00000583797 589 ntBASIC16.28■□□□□ 0.2
COL4A5P29400 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC16.28■□□□□ 0.2
COL4A5P29400 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC16.28■□□□□ 0.2
COL4A5P29400 NME1-209ENST00000511355 1645 ntTSL 5 BASIC16.28■□□□□ 0.2
COL4A5P29400 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
COL4A5P29400 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
COL4A5P29400 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
COL4A5P29400 LTA-213ENST00000418386 1422 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
COL4A5P29400 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 LINC00337-201ENST00000429480 1302 ntTSL 2 BASIC16.28■□□□□ 0.2
COL4A5P29400 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A5P29400 RN7SKP255-201ENST00000363442 313 ntBASIC16.27■□□□□ 0.2
COL4A5P29400 RN7SKP203-201ENST00000363618 332 ntBASIC16.27■□□□□ 0.2
COL4A5P29400 RN7SKP71-201ENST00000364558 318 ntBASIC16.27■□□□□ 0.2
COL4A5P29400 7SK.1-201ENST00000365328 331 ntBASIC16.27■□□□□ 0.2
COL4A5P29400 SNORD88B-201ENST00000408454 91 ntBASIC16.27■□□□□ 0.2
COL4A5P29400 AC026884.1-201ENST00000418296 457 ntBASIC16.27■□□□□ 0.2
COL4A5P29400 RN7SL2-201ENST00000490232 300 ntBASIC16.27■□□□□ 0.2
COL4A5P29400 LINC02376-201ENST00000536330 724 ntTSL 3 BASIC16.27■□□□□ 0.2
COL4A5P29400 DERL2-206ENST00000572834 589 ntTSL 3 BASIC16.27■□□□□ 0.2
COL4A5P29400 RN7SL4P-201ENST00000584058 295 ntBASIC16.27■□□□□ 0.2
COL4A5P29400 AC009041.1-202ENST00000599946 987 ntTSL 5 BASIC16.27■□□□□ 0.2
COL4A5P29400 AL033381.2-201ENST00000603854 732 ntBASIC16.27■□□□□ 0.2
COL4A5P29400 AC021321.1-201ENST00000607397 1113 ntBASIC16.27■□□□□ 0.2
COL4A5P29400 PILRB-213ENST00000609309 993 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A5P29400 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC16.27■□□□□ 0.2
COL4A5P29400 AC148476.1-201ENST00000622182 705 ntBASIC16.27■□□□□ 0.2
COL4A5P29400 DUX4L33-201ENST00000635217 958 ntBASIC16.27■□□□□ 0.2
COL4A5P29400 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms