Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 AL590824.1-201ENST00000403828 1349 ntBASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRIM39Q9HCM9 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 OR2K2-202ENST00000374428 1038 ntBASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 RN7SL67P-201ENST00000492147 296 ntBASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 CD164-210ENST00000512821 964 ntTSL 2 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 ALG1L13P-202ENST00000519320 584 ntBASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 AC134698.3-201ENST00000523880 214 ntBASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRIM39Q9HCM9 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 AC006987.1-201ENST00000413610 527 ntBASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 DUTP3-201ENST00000450025 415 ntBASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 AC234782.1-201ENST00000451950 919 ntBASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TRIM39Q9HCM9 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms