Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 tK(CUU)KtK(CUU)K 73 nt3.85□□□□□ -1.79
CUP9P41817 tK(CUU)MtK(CUU)M 73 nt3.85□□□□□ -1.79
CUP9P41817 tK(CUU)PtK(CUU)P 73 nt3.85□□□□□ -1.79
CUP9P41817 GPP1YIL053W 753 nt3.85□□□□□ -1.79
CUP9P41817 MNN11YJL183W 1269 nt3.85□□□□□ -1.79
CUP9P41817 CPR6YLR216C 1116 nt3.85□□□□□ -1.79
CUP9P41817 ELC1YPL046C 300 nt3.85□□□□□ -1.79
CUP9P41817 ATG18YFR021W 1503 nt3.85□□□□□ -1.79
CUP9P41817 CTT1YGR088W 1689 nt3.84□□□□□ -1.79
CUP9P41817 RPC53YDL150W 1269 nt3.84□□□□□ -1.79
CUP9P41817 CBT1YKL208W 816 nt3.84□□□□□ -1.79
CUP9P41817 FBP1YLR377C 1047 nt3.84□□□□□ -1.79
CUP9P41817 MET17YLR303W 1335 nt3.84□□□□□ -1.79
CUP9P41817 ATG23YLR431C 1362 nt3.84□□□□□ -1.79
CUP9P41817 TGL4YKR089C 2733 nt3.84□□□□□ -1.8
CUP9P41817 FLC1YPL221W 2382 nt3.83□□□□□ -1.8
CUP9P41817 OCA4YCR095C 1089 nt3.83□□□□□ -1.8
CUP9P41817 BUD25YER014C-A 462 nt3.83□□□□□ -1.8
CUP9P41817 YGR122WYGR122W 1209 nt3.83□□□□□ -1.8
CUP9P41817 NAT2YGR147C 867 nt3.83□□□□□ -1.8
CUP9P41817 EFB1YAL003W 621 nt3.83□□□□□ -1.8
CUP9P41817 TVP38YKR088C 1014 nt3.83□□□□□ -1.8
CUP9P41817 YLR407WYLR407W 687 nt3.83□□□□□ -1.8
CUP9P41817 YOR131CYOR131C 657 nt3.83□□□□□ -1.8
CUP9P41817 YDR261C-DYDR261C-D 4815 nt3.83□□□□□ -1.8
CUP9P41817 YPL260WYPL260W 1656 nt3.83□□□□□ -1.8
CUP9P41817 RFT1YBL020W 1725 nt3.83□□□□□ -1.8
CUP9P41817 MSK1YNL073W 1731 nt3.83□□□□□ -1.8
CUP9P41817 PRP28YDR243C 1767 nt3.83□□□□□ -1.8
CUP9P41817 IMA3YIL172C 1770 nt3.83□□□□□ -1.8
CUP9P41817 IMA4YJL221C 1770 nt3.83□□□□□ -1.8
CUP9P41817 MCM2YBL023C 2607 nt3.83□□□□□ -1.8
CUP9P41817 SPC105YGL093W 2754 nt3.83□□□□□ -1.8
CUP9P41817 MDR1YGR100W 2853 nt3.82□□□□□ -1.8
CUP9P41817 NUP2YLR335W 2163 nt3.82□□□□□ -1.8
CUP9P41817 ALG2YGL065C 1512 nt3.82□□□□□ -1.8
CUP9P41817 YDR246W-AYDR246W-A 201 nt3.82□□□□□ -1.8
CUP9P41817 LOH1YJL038C 660 nt3.82□□□□□ -1.8
CUP9P41817 KRE9YJL174W 831 nt3.82□□□□□ -1.8
CUP9P41817 YJL215CYJL215C 360 nt3.82□□□□□ -1.8
CUP9P41817 YJR038CYJR038C 363 nt3.82□□□□□ -1.8
CUP9P41817 MID2YLR332W 1131 nt3.82□□□□□ -1.8
CUP9P41817 MTF1YMR228W 1026 nt3.82□□□□□ -1.8
CUP9P41817 YPR059CYPR059C 387 nt3.82□□□□□ -1.8
CUP9P41817 HFA1YMR207C 6372 nt3.81□□□□□ -1.8
CUP9P41817 MDM34YGL219C 1380 nt3.81□□□□□ -1.8
CUP9P41817 NPL6YMR091C 1308 nt3.81□□□□□ -1.8
CUP9P41817 TRM11YOL124C 1302 nt3.81□□□□□ -1.8
CUP9P41817 KEX1YGL203C 2190 nt3.81□□□□□ -1.8
CUP9P41817 PTC1YDL006W 846 nt3.81□□□□□ -1.8
CUP9P41817 YDL228CYDL228C 642 nt3.81□□□□□ -1.8
CUP9P41817 BUD16YEL029C 939 nt3.81□□□□□ -1.8
CUP9P41817 YIL171WYIL171W 330 nt3.81□□□□□ -1.8
CUP9P41817 CDC42YLR229C 576 nt3.81□□□□□ -1.8
CUP9P41817 DSS4YPR017C 432 nt3.81□□□□□ -1.8
CUP9P41817 BRE4YDL231C 3378 nt3.81□□□□□ -1.8
CUP9P41817 PER1YCR044C 1074 nt3.8□□□□□ -1.8
CUP9P41817 PEX7YDR142C 1128 nt3.8□□□□□ -1.8
CUP9P41817 YNL194CYNL194C 906 nt3.8□□□□□ -1.8
CUP9P41817 RET3YPL010W 570 nt3.8□□□□□ -1.8
CUP9P41817 ATG1YGL180W 2694 nt3.8□□□□□ -1.8
CUP9P41817 MET4YNL103W 2019 nt3.8□□□□□ -1.8
CUP9P41817 RAD52YML032C 1416 nt3.79□□□□□ -1.8
CUP9P41817 KRE29YER038C 1395 nt3.79□□□□□ -1.8
CUP9P41817 ISR1YPR106W 1332 nt3.79□□□□□ -1.8
CUP9P41817 YCR006CYCR006C 474 nt3.79□□□□□ -1.8
CUP9P41817 CDC12YHR107C 1224 nt3.79□□□□□ -1.8
CUP9P41817 YIL021C-AYIL021C-A 270 nt3.79□□□□□ -1.8
CUP9P41817 ECM2YBR065C 1095 nt3.79□□□□□ -1.8
CUP9P41817 RIM21YNL294C 1602 nt3.79□□□□□ -1.8
CUP9P41817 EXO70YJL085W 1872 nt3.79□□□□□ -1.8
CUP9P41817 RPO21YDL140C 5202 nt3.78□□□□□ -1.8
CUP9P41817 ARC1YGL105W 1131 nt3.78□□□□□ -1.8
CUP9P41817 HPM1YIL110W 1134 nt3.78□□□□□ -1.8
CUP9P41817 SLD7YOR060C 774 nt3.78□□□□□ -1.8
CUP9P41817 HSP82YPL240C 2130 nt3.78□□□□□ -1.8
CUP9P41817 NTA1YJR062C 1374 nt3.77□□□□□ -1.81
CUP9P41817 OLE1YGL055W 1533 nt3.77□□□□□ -1.81
CUP9P41817 LAS1YKR063C 1509 nt3.77□□□□□ -1.81
CUP9P41817 RSC58YLR033W 1509 nt3.77□□□□□ -1.81
CUP9P41817 YGL152CYGL152C 678 nt3.77□□□□□ -1.81
CUP9P41817 YKE4YIL023C 1041 nt3.77□□□□□ -1.81
CUP9P41817 POP3YNL282W 588 nt3.77□□□□□ -1.81
CUP9P41817 SMA1YPL027W 738 nt3.77□□□□□ -1.81
CUP9P41817 VPS69YPR087W 321 nt3.77□□□□□ -1.81
CUP9P41817 PCL8YPL219W 1479 nt3.77□□□□□ -1.81
CUP9P41817 TIF4632YGL049C 2745 nt3.76□□□□□ -1.81
CUP9P41817 GRC3YLL035W 1899 nt3.76□□□□□ -1.81
CUP9P41817 YDL124WYDL124W 939 nt3.76□□□□□ -1.81
CUP9P41817 BUD13YGL174W 801 nt3.76□□□□□ -1.81
CUP9P41817 ADD37YMR184W 597 nt3.76□□□□□ -1.81
CUP9P41817 SCP1YOR367W 603 nt3.76□□□□□ -1.81
CUP9P41817 GCR2YNL199C 1605 nt3.76□□□□□ -1.81
CUP9P41817 DPB2YPR175W 2070 nt3.75□□□□□ -1.81
CUP9P41817 APM4YOL062C 1476 nt3.75□□□□□ -1.81
CUP9P41817 AAD6YFL056C 639 nt3.75□□□□□ -1.81
CUP9P41817 tQ(UUG)CtQ(UUG)C 72 nt3.75□□□□□ -1.81
CUP9P41817 tQ(UUG)D1tQ(UUG)D1 72 nt3.75□□□□□ -1.81
CUP9P41817 tQ(UUG)D2tQ(UUG)D2 72 nt3.75□□□□□ -1.81
CUP9P41817 tQ(UUG)D3tQ(UUG)D3 72 nt3.75□□□□□ -1.81
Retrieved 100 of 7,029 protein–RNA pairs in 20.9 ms