RNA–Protein interactions for RNA: YDL140C

RPO21, Transcript of RNA polymerase II largest subunit B220, yeast

Gene RPO21, Length 5,202 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPO21	YDL140C	MTC1	P47018	478 aa	Known RBP	6.39	□□□□□ -1.39
RPO21	YDL140C	RQC2	Q12532	1038 aa	Known RBP	5.85	□□□□□ -1.47
RPO21	YDL140C	RSE1	Q04693	1361 aa	Known RBP	5.76	□□□□□ -1.49
RPO21	YDL140C	SCT1	P32784	759 aa		5.67	□□□□□ -1.5
RPO21	YDL140C	INO80	P53115	1489 aa		5.64	□□□□□ -1.51
RPO21	YDL140C	NAP1	P25293	417 aa	Known RBP	5.54	□□□□□ -1.52
RPO21	YDL140C	ABP1	P15891	592 aa	Known RBP	5.48	□□□□□ -1.53
RPO21	YDL140C	DRS1	P32892	752 aa	Known RBP	5.47	□□□□□ -1.53
RPO21	YDL140C	RTT106	P40161	455 aa		5.47	□□□□□ -1.53
RPO21	YDL140C	TAF7	Q05021	590 aa		5.46	□□□□□ -1.54
RPO21	YDL140C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	5.45	□□□□□ -1.54	not detected
RPO21	YDL140C	SPA2	P23201	1466 aa	Known RBP	5.44	□□□□□ -1.54
RPO21	YDL140C	URN1	Q06525	465 aa	Known RBP	5.43	□□□□□ -1.54
RPO21	YDL140C	TFA1	P36100	482 aa		5.43	□□□□□ -1.54
RPO21	YDL140C	YTA7	P40340	1379 aa		5.42	□□□□□ -1.54
RPO21	YDL140C	MIF2	P35201	549 aa		5.39	□□□□□ -1.55
RPO21	YDL140C	PAF1	P38351	445 aa		5.37	□□□□□ -1.55
RPO21	YDL140C	LEU3	P08638	886 aa		5.36	□□□□□ -1.55
RPO21	YDL140C	BFR2	Q06631	534 aa	Known RBP	5.32	□□□□□ -1.56
RPO21	YDL140C	SAS10	Q12136	610 aa	Predicted RBP	5.31	□□□□□ -1.56
RPO21	YDL140C	ENP1	P38333	483 aa	Known RBP	5.3	□□□□□ -1.56
RPO21	YDL140C	YJL181W	P46987	611 aa		5.3	□□□□□ -1.56
RPO21	YDL140C	POL5	P39985	1022 aa	Known RBP	5.21	□□□□□ -1.57
RPO21	YDL140C	MRX12	P47084	519 aa		5.21	□□□□□ -1.58
RPO21	YDL140C	UBP1	P25037	809 aa		5.19	□□□□□ -1.58
RPO21	YDL140C	NOP7	P53261	605 aa	Known RBP	5.17	□□□□□ -1.58
RPO21	YDL140C	SIS2	P36024	562 aa		5.15	□□□□□ -1.58
RPO21	YDL140C	IFH1	P39520	1085 aa		5.15	□□□□□ -1.58
RPO21	YDL140C	RRT14	P40470	206 aa		5.15	□□□□□ -1.59
RPO21	YDL140C	PRI1	P10363	409 aa		5.11	□□□□□ -1.59
RPO21	YDL140C	CKB1	P43639	278 aa		5.06	□□□□□ -1.6
RPO21	YDL140C	TAF2	P23255	1407 aa		5.05	□□□□□ -1.6
RPO21	YDL140C	YFR006W	P43590	535 aa		5.03	□□□□□ -1.6
RPO21	YDL140C	SEN54	Q02825	467 aa	Predicted RBP	5.03	□□□□□ -1.6
RPO21	YDL140C	SKI3	P17883	1432 aa	Known RBP	5.03	□□□□□ -1.6
RPO21	YDL140C	PRP40	P33203	583 aa	Known RBP	5.02	□□□□□ -1.61
RPO21	YDL140C	BUD21	Q08492	214 aa	Predicted RBP	5.01	□□□□□ -1.61
RPO21	YDL140C	CLB5	P30283	435 aa		5	□□□□□ -1.61
RPO21	YDL140C	TAF5	P38129	798 aa		5	□□□□□ -1.61
RPO21	YDL140C	BNR1	P40450	1375 aa		4.99	□□□□□ -1.61
RPO21	YDL140C	SGS1	P35187	1447 aa		4.98	□□□□□ -1.61
RPO21	YDL140C	SUP35	P05453	685 aa	Known RBP	4.97	□□□□□ -1.61
RPO21	YDL140C	LAM6	Q08001	693 aa		4.97	□□□□□ -1.61
RPO21	YDL140C	YMR196W	Q04336	1088 aa		4.96	□□□□□ -1.61
RPO21	YDL140C	STH1	P32597	1359 aa		4.96	□□□□□ -1.62
RPO21	YDL140C	KOG1	P38873	1557 aa		4.95	□□□□□ -1.62
RPO21	YDL140C	DRS2	P39524	1355 aa		4.95	□□□□□ -1.62
RPO21	YDL140C	UGA2	P38067	497 aa		4.94	□□□□□ -1.62
RPO21	YDL140C	TCB3	Q03640	1545 aa	Known RBP	4.94	□□□□□ -1.62
RPO21	YDL140C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
RPO21	YDL140C	RTF1	P53064	558 aa		4.92	□□□□□ -1.62
RPO21	YDL140C	TIF4632	P39936	914 aa	Known RBP	4.92	□□□□□ -1.62
RPO21	YDL140C	BUD4	P47136	1447 aa		4.92	□□□□□ -1.62
RPO21	YDL140C	MET10	P39692	1035 aa		4.92	□□□□□ -1.62
RPO21	YDL140C	ENP2	P48234	707 aa	Known RBP	4.91	□□□□□ -1.62
RPO21	YDL140C	FPR3	P38911	411 aa	Known RBP	4.91	□□□□□ -1.62
RPO21	YDL140C	NOP8	Q08287	484 aa	Predicted RBP	4.91	□□□□□ -1.62
RPO21	YDL140C	AVT3	P36062	692 aa		4.9	□□□□□ -1.63
RPO21	YDL140C	SVF1	Q05515	481 aa		4.88	□□□□□ -1.63
RPO21	YDL140C	HPC2	Q01448	625 aa		4.88	□□□□□ -1.63
RPO21	YDL140C	SAP155	P43612	1002 aa		4.87	□□□□□ -1.63
RPO21	YDL140C	HUL5	P53119	910 aa		4.87	□□□□□ -1.63
RPO21	YDL140C	TRM732	Q03496	1420 aa		4.86	□□□□□ -1.63
RPO21	YDL140C	SPT5	P27692	1063 aa	Known RBP	4.86	□□□□□ -1.63
RPO21	YDL140C	PSD2	P53037	1138 aa	Known RBP	4.86	□□□□□ -1.63
RPO21	YDL140C	MEC3	Q02574	474 aa		4.85	□□□□□ -1.63
RPO21	YDL140C	LEO1	P38439	464 aa		4.85	□□□□□ -1.63
RPO21	YDL140C	AIM7	Q12156	149 aa		4.85	□□□□□ -1.63
RPO21	YDL140C	ALD3	P54114	506 aa		4.84	□□□□□ -1.64
RPO21	YDL140C	ALD2	P47771	506 aa		4.83	□□□□□ -1.64
RPO21	YDL140C	ECM5	Q03214	1411 aa		4.83	□□□□□ -1.64
RPO21	YDL140C	PAP2	P53632	584 aa	Known RBP	4.82	□□□□□ -1.64
RPO21	YDL140C	SWR1	Q05471	1514 aa		4.82	□□□□□ -1.64
RPO21	YDL140C	YPR148C	Q06523	435 aa		4.81	□□□□□ -1.64
RPO21	YDL140C	CHZ1	P40019	153 aa	Predicted RBP	4.8	□□□□□ -1.64
RPO21	YDL140C	FUN12	P39730	1002 aa	Known RBP	4.8	□□□□□ -1.64
RPO21	YDL140C	SPT7	P35177	1332 aa		4.8	□□□□□ -1.64
RPO21	YDL140C	CSE1	P33307	960 aa		4.79	□□□□□ -1.64
RPO21	YDL140C	SMC4	Q12267	1418 aa		4.79	□□□□□ -1.64
RPO21	YDL140C	IRC3	Q06683	689 aa		4.79	□□□□□ -1.64
RPO21	YDL140C	ATG13	Q06628	738 aa		4.79	□□□□□ -1.64
RPO21	YDL140C	MMS1	Q06211	1407 aa		4.78	□□□□□ -1.64
RPO21	YDL140C	GEA2	P39993	1459 aa	Known RBP	4.78	□□□□□ -1.64
RPO21	YDL140C	YAP3	P38749	330 aa		4.78	□□□□□ -1.64
RPO21	YDL140C	TPM1	P17536	199 aa	Known RBP	4.77	□□□□□ -1.65
RPO21	YDL140C	PKH1	Q03407	766 aa		4.77	□□□□□ -1.65
RPO21	YDL140C	RIA1	P53893	1110 aa		4.77	□□□□□ -1.65
RPO21	YDL140C	DNA2	P38859	1522 aa		4.76	□□□□□ -1.65
RPO21	YDL140C	SPT6	P23615	1451 aa	Known RBP	4.75	□□□□□ -1.65
RPO21	YDL140C	RPS9B	P05755	195 aa	Known RBP	4.75	□□□□□ -1.65
RPO21	YDL140C	KEX1	P09620	729 aa		4.74	□□□□□ -1.65
RPO21	YDL140C	YAF9	P53930	226 aa		4.74	□□□□□ -1.65
RPO21	YDL140C	YEF3	P16521	1044 aa	Known RBP	4.74	□□□□□ -1.65
RPO21	YDL140C	MDG1	P53885	366 aa		4.73	□□□□□ -1.65
RPO21	YDL140C	RIX7	Q07844	837 aa	Known RBP	4.72	□□□□□ -1.65
RPO21	YDL140C	ENV9	Q08651	330 aa		4.72	□□□□□ -1.65
RPO21	YDL140C	FPR4	Q06205	392 aa	Predicted RBP	4.72	□□□□□ -1.65
RPO21	YDL140C	ESL2	P36168	1195 aa		4.71	□□□□□ -1.65
RPO21	YDL140C	RSC30	P38781	883 aa		4.71	□□□□□ -1.66
RPO21	YDL140C	MAK10	Q02197	733 aa		4.7	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 41.1 ms