Protein–RNA interactions for Protein: O60925

PFDN1, Prefoldin subunit 1, humanhuman

Predictions only

Length 122 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN1O60925 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
PFDN1O60925 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
PFDN1O60925 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.21■□□□□ 0.83
PFDN1O60925 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PFDN1O60925 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PFDN1O60925 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
PFDN1O60925 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.83
PFDN1O60925 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.83
PFDN1O60925 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PFDN1O60925 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PFDN1O60925 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PFDN1O60925 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
PFDN1O60925 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PFDN1O60925 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PFDN1O60925 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PFDN1O60925 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
PFDN1O60925 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PFDN1O60925 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PFDN1O60925 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.2■□□□□ 0.82
PFDN1O60925 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.2■□□□□ 0.82
PFDN1O60925 AC026310.3-201ENST00000625186 2373 ntBASIC20.2■□□□□ 0.82
PFDN1O60925 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.19■□□□□ 0.82
PFDN1O60925 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PFDN1O60925 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PFDN1O60925 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.19■□□□□ 0.82
PFDN1O60925 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PFDN1O60925 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PFDN1O60925 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PFDN1O60925 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PFDN1O60925 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PFDN1O60925 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PFDN1O60925 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PFDN1O60925 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PFDN1O60925 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PFDN1O60925 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PFDN1O60925 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.18■□□□□ 0.82
PFDN1O60925 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.18■□□□□ 0.82
PFDN1O60925 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PFDN1O60925 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PFDN1O60925 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PFDN1O60925 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC20.18■□□□□ 0.82
PFDN1O60925 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PFDN1O60925 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.18■□□□□ 0.82
PFDN1O60925 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.18■□□□□ 0.82
PFDN1O60925 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
PFDN1O60925 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
PFDN1O60925 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
PFDN1O60925 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PFDN1O60925 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PFDN1O60925 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
PFDN1O60925 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PFDN1O60925 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PFDN1O60925 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PFDN1O60925 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.17■□□□□ 0.82
PFDN1O60925 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
PFDN1O60925 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
PFDN1O60925 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
PFDN1O60925 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PFDN1O60925 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
PFDN1O60925 SLC6A10P-202ENST00000431994 2058 ntBASIC20.17■□□□□ 0.82
PFDN1O60925 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PFDN1O60925 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PFDN1O60925 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.16■□□□□ 0.82
PFDN1O60925 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.16■□□□□ 0.82
PFDN1O60925 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
PFDN1O60925 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
PFDN1O60925 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PFDN1O60925 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.15■□□□□ 0.82
PFDN1O60925 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
PFDN1O60925 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
PFDN1O60925 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PFDN1O60925 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PFDN1O60925 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
PFDN1O60925 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.15■□□□□ 0.82
PFDN1O60925 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PFDN1O60925 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PFDN1O60925 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.14■□□□□ 0.82
PFDN1O60925 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
PFDN1O60925 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PFDN1O60925 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.14■□□□□ 0.81
PFDN1O60925 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
PFDN1O60925 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PFDN1O60925 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC20.14■□□□□ 0.81
PFDN1O60925 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PFDN1O60925 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PFDN1O60925 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PFDN1O60925 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PFDN1O60925 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
PFDN1O60925 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PFDN1O60925 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.13■□□□□ 0.81
PFDN1O60925 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PFDN1O60925 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PFDN1O60925 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PFDN1O60925 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
PFDN1O60925 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PFDN1O60925 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PFDN1O60925 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.13■□□□□ 0.81
PFDN1O60925 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PFDN1O60925 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PFDN1O60925 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms